Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1825 ATGGATCAGCAAGGGCATGGCCAACCTCCATCCATGGGAGCGGTTGGCAGTGGTGGTCAGATGGCATATGGTAGCAACCTGTACCATCCCAGCCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCACAACTTGCTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGCAAATCAATACCAAGAGATTGAGAAGGTAACCGACTTCAAGAACCATAGTCTTCCGTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGACGTACGAATGATATCAGCTGAGGCACCGGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGTAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATTGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACGTCGATTCCAAGAGGATCAATAACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTCGGGGCGCCTGGAATGATTATGGGTAAGCCCGTGATGGACCCAACCATGTATGCTCAGCAATCGCACCCTTACATGCCTCCACAAATGTGGCAACACGCACAAGATCAAATCCCTCCTGATCAATAG 771 48.25 MDQQGHGQPPSMGAVGSGGQMAYGSNLYHPSQMTVGPTSGSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPTMYAQQSHPYMPPQMWQHAQDQIPPDQ 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 57828189 57831443 - Hsped.09g18250.1 Hepe09g1825 580509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1825 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 72 185 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Hepe09g1825 256 FunFam Nuclear transcription factor Y subunit gamma 64 177 - -
Hepe09g1825 256 Gene3D Histone, subunit A 61 177 IPR009072 GO:0046982(InterPro)
Hepe09g1825 256 MobiDBLite consensus disorder prediction 26 53 - -
Hepe09g1825 256 SUPERFAMILY Histone-fold 67 171 IPR009072 GO:0046982(InterPro)
Hepe09g1825 256 Pfam Core histone H2A/H2B/H3/H4 60 162 IPR007125 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1825 K08066 - - csv:101209664 448.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0787 Hepe-Chr2:8894504 Hepe09g1825 Hepe-Chr9:57828189 3.45e-81 dispersed
Hepe09g0045 Hepe-Chr9:366379 Hepe09g1825 Hepe-Chr9:57828189 1.21e-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0045 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.3e-87 318.9
Hepe09g1825 . 78 246 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.1e-53 204.1
Hepe02g0787 . 77 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.4e-52 203.4
Hepe09g1825 . 1 256 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.6 3.9e-55 211.8
Hepe02g0787 . 11 175 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 3.5e-48 188.7
Hepe09g0045 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.5e-43 171.0
Hepe09g1825 . 16 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 8.9e-62 233.8
Hepe02g0787 . 23 219 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.6 6.4e-52 201.1
Hepe09g0045 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.5 1.1e-51 200.3
Hepe09g0045 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.3 8.3e-38 154.1
Hepe09g0045 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 3.4e-81 298.5
Hepe09g1825 . 78 246 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.2e-49 193.7
Hepe02g0787 . 77 228 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.6e-49 192.6
Hepe02g0787 . 41 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.5 1.1e-63 240.0
Hepe09g1825 . 50 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 5.0e-51 198.0
Hepe09g0045 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 1.2e-49 193.4
Hepe10g0104 . 3 136 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.2 2.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56421 PF00808 CBFD_NFYB_HMF 2.70E-18 CL0012 Hepe TF