Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe09g1855 ATGGAGAGCCATGGAGCCGGTAGTTATTTCGTGGATGAGAAGGTCGTTCTCGTCGAGAACATTTTCTTCGAATTCCTCAAGAGTTTTCGCCTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATTGAAGCTATGATGGTTGGCGAATCTAACACCATGTTTATTGATTCCGCTCACCTCATGCACTCCAATGATCTTCTTCACATAGCAATCGTTGATGAATATATGAGGTTTGAACCATACCTCAAGAACGCTTGTAAGCGATTCGTAATGGAGCAGAATCCCTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCTGTCTCTAAAAGGTACATCCCAGAGTTGACTACTGCAGAAATTGGAAAATTAGTATCTGTGACAGGAGTGGTGACGCAGACAAGCGAGGTCCGACCAGAACTTCTACAAGGGACCTTCAAGTGCTTAGAATGTGGAAACGTCATAAAGAATGTCGAACAACAATTTAAGTACACGGAGCCAACAATATGCATGAACCCAACATGTTCGAATAGAACAAGGTGGGCATTACTTCGGCAAGAGAGTAAATTCGTTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCTAAGGAGATATCGGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTTCGCCATGAGATGGTCGAACGTGCCAGGGCTGAGACACGTAAGACCAGTTACCTTGTCTTTCATTTATTGGTCATCTTTACGGGTACAGTAGTTGTTGTACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGACGAGAAGCTTCAGAGCGAAGTAACTCTGCGGTTGGACACGAAGGAATGAGGGGGCTACGAGCACTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATCCAGTTCAGGCTAGTCTTTGA 960 45.42 MESHGAGSYFVDEKVVLVENIFFEFLKSFRLNGNSGDPYYEAEIEAMMVGESNTMFIDSAHLMHSNDLLHIAIVDEYMRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRYIPELTTAEIGKLVSVTGVVTQTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTRWALLRQESKFVDWQRVRMQETSKEISAGSLPRSLDVILRHEMVERARAETRKTSYLVFHLLVIFTGTVVVVPDILALASPGERAECRREASERSNSAVGHEGMRGLRALGVRDLSYRLAFIANPVQASL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 59130146 59131809 + Hsped.09g18550.1 Hepe09g1855 580539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe09g1855 319 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 77 89 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Hepe09g1855 319 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 170 187 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Hepe09g1855 319 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 120 132 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Hepe09g1855 319 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 292 313 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Hepe09g1855 319 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 15 310 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER)
Hepe09g1855 319 SMART mcm 119 319 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe09g1855 319 Gene3D - 125 237 IPR012340 -
Hepe09g1855 319 Gene3D - 10 118 - -
Hepe09g1855 319 SUPERFAMILY Nucleic acid-binding proteins 22 237 IPR012340 -
Hepe09g1855 319 Pfam MCM OB domain 125 239 IPR033762 -
Hepe09g1855 319 Pfam MCM N-terminal domain 21 115 IPR027925 -
Hepe09g1855 319 Gene3D - 150 201 - -
Hepe09g1855 319 FunFam DNA helicase 150 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g1855 Hepe-Chr9:59130146 Hepe09g1861 Hepe-Chr9:59254830 9.90e-150 dispersed
Hepe09g1855 Hepe-Chr9:59130146 Hepe09g1860 Hepe-Chr9:59246345 5.51e-195 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe09g1855 K02542 - csv:101219775 533.487