Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe09g1857 | ATGTATAAGAAGGGTGGTTGTCCCACATCGAAAAGAATCAGAAGAGTTTTTGATATCAGAAACAGGAAAAAGGATGCGGATGAAGATAACCAACAGTTTACCACTGGAGAGCTTGAGGAAGTTCAAAGAATGAGGAATACACCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGCGTCCACAAGTTAACTCATGAAGGCATTAACCTTCGAGGTGACATCAATGTTTGTATAGTAGGAGATCCAAGCTGTGCAAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAATCCTCTTCTGCTGCGGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCTTAATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACGTCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACGAAAGCCGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGGTATGACAAGTCTAAACCACTGAAGTATAATGTTGCTTTGCCTCCTGCTATTCTCTCAAGGTTCGACCTCGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCACATTGCACACCACATTGTCAGAGTACATCAGAAGCATGAGGATGCTCTTTCTCCTGCATTTACTACTACCGAGTTGAAACGTTATATTGCTTATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTAGACTCTTATGTTGCTCTTCGGAGAGGAGATACAACTCCTGGAAGTAGGGTTGCCTATCGCATGACTGTCAGGCAGCTTGAGGCATTAGTAAGGCTGTCAGAAGCAATTGCACGTAGTTATTTGGAGACTCTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACATTACTGAAAACGTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGTGTTGGAGACGGTAATAATAATGTCGACAATGGACCAAATGAGGTTGATGCTGAACCTAGGAGTGGTGCACCAGAGCCACCAACTTCTGGAAATGGTGAAATGGGTTCAGATTCTGGAAGTAAACACGAGGAGAAGAAACTTACCCTGGGTTATGAATATTTTCAGAGGGTTACCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATTAGTGATGCAAGAAGGAAATGAGCTGGCAGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGAATCAACAGAACGAGAGAAATAGCTATAGCTCCGTGGAAGAGGTAGAAAATGAAGTAAAATTAATTAGAGCTATTATCCAGAGTTTGATACGAAAGGAAGGGCATTTGATAGTGGTAGATGACGGGAGGGCGGTAGGTGGCGAGGCTGAAGGCAAACCATCTTCGTTAAACAGGAATAACAGGATTTTAGCTGTGGCTCCTAATTATGTGGTTGATTAG | 1632 | 42.77 | MYKKGGCPTSKRIRRVFDIRNRKKDADEDNQQFTTGELEEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDVRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTTELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALVRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFQEETNGVGDGNNNVDNGPNEVDAEPRSGAPEPPTSGNGEMGSDSGSKHEEKKLTLGYEYFQRVTQALVMRLRQHEELVMQEGNELAGMRQRDLIEWYVNQQNERNSYSSVEEVENEVKLIRAIIQSLIRKEGHLIVVDDGRAVGGEAEGKPSSLNRNNRILAVAPNYVVD | 543 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 59134974 | 59141004 | - | Hsped.09g18570.1 | Hepe09g1857 | 580541 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe09g1857 | 543 | Pfam | MCM AAA-lid domain | 275 | 360 | IPR041562 | - | |
| Hepe09g1857 | 543 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 60 | 361 | IPR027417 | - | |
| Hepe09g1857 | 543 | MobiDBLite | consensus disorder prediction | 377 | 391 | - | - | |
| Hepe09g1857 | 543 | MobiDBLite | consensus disorder prediction | 376 | 422 | - | - | |
| Hepe09g1857 | 543 | CDD | MCM6 | 53 | 359 | - | - | |
| Hepe09g1857 | 543 | ProSitePatterns | MCM family signature. | 159 | 167 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Hepe09g1857 | 543 | Gene3D | - | 36 | 365 | IPR027417 | - | |
| Hepe09g1857 | 543 | ProSiteProfiles | MCM family domain profile. | 50 | 256 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1857 | 543 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 179 | 192 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1857 | 543 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 230 | 238 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1857 | 543 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 151 | 165 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1857 | 543 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 91 | 106 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1857 | 543 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 203 | 215 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1857 | 543 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 15 | 483 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Hepe09g1857 | 543 | Coils | Coil | 483 | 503 | - | - | |
| Hepe09g1857 | 543 | Gene3D | - | 422 | 543 | - | - | |
| Hepe09g1857 | 543 | FunFam | DNA helicase | 421 | 543 | - | - | |
| Hepe09g1857 | 543 | Pfam | MCM P-loop domain | 38 | 260 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1857 | 543 | Pfam | MCM6 C-terminal winged-helix domain | 424 | 541 | IPR041024 | - | |
| Hepe09g1857 | 543 | FunFam | DNA helicase | 35 | 365 | - | - | |
| Hepe09g1857 | 543 | SMART | mcm | 1 | 361 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe09g1857 | Hepe-Chr9:59134974 | Hepe09g1860 | Hepe-Chr9:59246345 | 0.0 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe09g1857 | K02542 | - | csv:101219775 | 905.59 |