Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe09g1860 | ATGAGCCCATGGGCCAGTGCAGGGTCAACCCAAGCCCAAAACACGTTGATTTTGGCGGGAAAATGCGACGACATTTCGGCGCCAAAAGTGCAAACCCAAACCTTTACCTTCATTCTTCACTCACAATCCTTGAATCCTCCAGCGACACACAACCAAACCAAAGATATGGAGAGCCATGGAGCCGGTAGTTATTTCGTGGATGAGAAGGCCGTTCTCGTCGAGAACATTTTCTTCGAATTCCTCAAGAGTTTTCGCCTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATTGAAGCTATGATGGCTGGCGAATCTAACACCATGTTTATTGATTTCGCTCACCTCATGCACTCCAATGATCTTCTTCACATAGCAATCGCCGACGAATATCTGAGGTTTGAACCATACCTCAAGAACGCTTGTAAGCGATTCGTAATGGAGCATAATCCTTCTTTCATCGCTGATGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCTGTCTCTAAAAGGTTGAGAGAGTTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAAGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTCGAACAACAATTTAAGTACATGGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACAAGGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTTCGCCATGAGATGGTCGAACGTGCCAGGGCTGGAGACACGGTCATCTTCACGGGTACAGTAGTTGTTGCACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGACGAGAAGCTTCAGAGCGAAGTAACTCTGCGGTTGGACACGAAGGAATGAGGGGGCTACGAGCACTAGGAGTGAGGGACTTGTCCTATCGCCTAGCCTTTATTGCCAATTTAGTTCAGGTTTTAGATGGCAGAAGAGTTTTTGATATCAGAAACAGGAAAAAGGATGCGGATGAAGATAACCAACAGTTTACCACTGGAGAGCTTGAGGAAGTTCAAAGAATGAGGAATACACCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGCGTCCACAAGTTAACTCATGAAGGCATTAACCTTCGAGGTGACATCAATGTTTGTATAGTAGGAGATCCAAGCTGTGCAAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAATCCTCTTCTGCTGCGGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCTTAATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACGTCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACGAAAGCCGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGGTATGACAAGTCTAAACCACTGAAGTATAATGTTGCTTTGCCTCCTGCTATTCTCTCAAGGTTCGACCTCGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCACATTGCACACCACATTGTCAGAGTACATCAGAAGCATGAGGATGCTCTTTCTCCTGCATTTACTACTACCGAGTTGAAACGTTATATTGCTTATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTAGACTCTTATGTTGCTCTTCGGAGAGGAGATACAACTCCTGGAAGTAGGGTTGCCTATCGCATGACTGTCAGGCAGCTTGAGGCATTAGTAAGGCTGTCAGAAGCAATTGCACGTAGTTATTTGGAGACTCTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACATTACTGAAAACGTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGTGTTGGAGACGGTAATAATAATGTCGACAATGGACCAAATGAGGTTGATGCTGAACCTAGGAGTGGTGCACCAGAGCCACCAACTTCTGGAAATGGTGAAATGGGTTCAGATTCTGGAAGTAAACACGAGGAGAAGAAACTTACCCTGGGTTATGAATATTTTCAGAGGGTTACCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATTAGTGATGCAAGAAGGAAATGAGCTGGCAGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGAATCAACAGAACGAGAGAAATAGCTATAGCTCCGTGGAAGAGGTAGAAAATGAAGTAAAATTAATTAGAGCTATTATCCAGAGTTTGATACGAAAGGAAGGGCATTTGATAGTGGTAGATGACGGGAGGGCGGTAGGTGGCGAGGCTGAAGGCGAACCATCTTCGTTAAACAGGAATAACAGGATTTTAGCTGTGGCTCCTAATTATGTGGTTGATTAG | 2685 | 44.47 | MSPWASAGSTQAQNTLILAGKCDDISAPKVQTQTFTFILHSQSLNPPATHNQTKDMESHGAGSYFVDEKAVLVENIFFEFLKSFRLNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMHSNDLLHIAIADEYLRFEPYLKNACKRFVMEHNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYMEPTICMNPTCSNRTRWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVAPDILALASPGERAECRREASERSNSAVGHEGMRGLRALGVRDLSYRLAFIANLVQVLDGRRVFDIRNRKKDADEDNQQFTTGELEEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDVRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTTELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALVRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFQEETNGVGDGNNNVDNGPNEVDAEPRSGAPEPPTSGNGEMGSDSGSKHEEKKLTLGYEYFQRVTQALVMRLRQHEELVMQEGNELAGMRQRDLIEWYVNQQNERNSYSSVEEVENEVKLIRAIIQSLIRKEGHLIVVDDGRAVGGEAEGEPSSLNRNNRILAVAPNYVVD | 894 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 59246345 | 59253055 | - | Hsped.09g18600.1 | Hepe09g1860 | 580544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe09g1860 | 894 | CDD | MCM6 | 404 | 710 | - | - | |
| Hepe09g1860 | 894 | Gene3D | - | 204 | 255 | - | - | |
| Hepe09g1860 | 894 | Gene3D | - | 387 | 716 | IPR027417 | - | |
| Hepe09g1860 | 894 | FunFam | DNA helicase | 772 | 894 | - | - | |
| Hepe09g1860 | 894 | Gene3D | - | 177 | 304 | IPR012340 | - | |
| Hepe09g1860 | 894 | ProSiteProfiles | MCM family domain profile. | 401 | 607 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1860 | 894 | Pfam | MCM AAA-lid domain | 626 | 711 | IPR041562 | - | |
| Hepe09g1860 | 894 | SUPERFAMILY | Nucleic acid-binding proteins | 77 | 307 | IPR012340 | - | |
| Hepe09g1860 | 894 | MobiDBLite | consensus disorder prediction | 728 | 742 | - | - | |
| Hepe09g1860 | 894 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 71 | 830 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Hepe09g1860 | 894 | Coils | Coil | 834 | 854 | - | - | |
| Hepe09g1860 | 894 | ProSitePatterns | MCM family signature. | 510 | 518 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Hepe09g1860 | 894 | Pfam | MCM N-terminal domain | 76 | 170 | IPR027925 | - | |
| Hepe09g1860 | 894 | MobiDBLite | consensus disorder prediction | 727 | 773 | - | - | |
| Hepe09g1860 | 894 | Pfam | MCM6 C-terminal winged-helix domain | 775 | 892 | IPR041024 | - | |
| Hepe09g1860 | 894 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 411 | 712 | IPR027417 | - | |
| Hepe09g1860 | 894 | Pfam | MCM OB domain | 177 | 305 | IPR033762 | - | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 554 | 566 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 442 | 457 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 502 | 516 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 581 | 589 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 530 | 543 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1860 | 894 | Gene3D | - | 65 | 173 | - | - | |
| Hepe09g1860 | 894 | FunFam | DNA helicase | 204 | 255 | - | - | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 224 | 241 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 336 | 357 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 174 | 186 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 277 | 288 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe09g1860 | 894 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 132 | 144 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Hepe09g1860 | 894 | Gene3D | - | 773 | 894 | - | - | |
| Hepe09g1860 | 894 | FunFam | DNA helicase | 386 | 716 | - | - | |
| Hepe09g1860 | 894 | SMART | mcm | 173 | 712 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Hepe09g1860 | 894 | Pfam | MCM P-loop domain | 389 | 611 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe02g0482 | Hepe-Chr2:4712032 | Hepe09g1860 | Hepe-Chr9:59246345 | 3.14e-112 | dispersed | |
| Hepe03g1834 | Hepe-Chr3:75315793 | Hepe09g1860 | Hepe-Chr9:59246345 | 2.71e-104 | dispersed | |
| Hepe07g2577 | Hepe-Chr7:70269433 | Hepe09g1860 | Hepe-Chr9:59246345 | 0.0 | dispersed | |
| Hepe08g2481 | Hepe-Chr8:65901596 | Hepe09g1860 | Hepe-Chr9:59246345 | 8.51e-94 | dispersed | |
| Hepe09g1855 | Hepe-Chr9:59130146 | Hepe09g1860 | Hepe-Chr9:59246345 | 5.51e-195 | proximal | |
| Hepe09g1857 | Hepe-Chr9:59134974 | Hepe09g1860 | Hepe-Chr9:59246345 | 0.0 | proximal | |
| Hepe09g1860 | Hepe-Chr9:59246345 | Hepe09g1862 | Hepe-Chr9:59269313 | 3.14e-51 | proximal | |
| Hepe09g1860 | Hepe-Chr9:59246345 | Hepe09g1861 | Hepe-Chr9:59254830 | 1.69e-168 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe09g1860 | K02542 | - | csv:101219775 | 1476.46 |