Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0002 ATGGCAGCTCGGAGGGTATCCTCGCTCTTATCTCGTTCTTCACCTGCCGCTCTCCTTTCCAAAGGGAGGAGGCCTTCCGGTGGCAGAACAAGTGGCAAATATAGCACTACGGCTGCTGTTGAACACCCGATTACTCCATCTGTGAAAGTAAACTATACCCAGCTATTAATCAACGGAAAGTTTGTGGATTCAGTCTCAGGAAAAACTTTTCCTACGTTGGATCCCAGGACTGGGGAAGTCATTGCCCAAGTTGCTGAAGGTGACGCCAAAGATGTTGATCTTGCAGTTTCCGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCTAGGCTGACTGCTTATGAAAGATCAAAGATACTTTTGCGGTTTGCTGATTTGGTTGAAAAGCATGTCGAAGAAATTGCAGCACTCGAAACTTGGGACAACGGGAAAACATACGAACAGTCAGCCAAACTGGAGGTCCCAATGTTCGTACGCCTCTTTCGATACTATGGCGGATGGGCGGATAAGATTCACGGACTCACAGTTCCAGCTGATGGGTCGTATCATGTGCAGACCTTGCACGAACCAATTGGTGTTGCGGGTCAGATTATTCCATGGAACTTTCCTCTTATCATGTTTGCTTGGAAGGTTGGTCCAGCATTGGCATGTGGGAATACTGTTGTTCTCAAGACAGCCGAGCAGACACCTTTGTCCGCTCTCTATGTGGCTAACCTATTGCATGAGGTACATTTTGGCCAATTCACTCACATATATCAATCACCCTGCCCTTACTTCATAGTTCATATATATATATATATATGGCAGGCTGGACTTCCTGAGGGCGTTCTCAATATTGTTTCTGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCCACCGAAACAGGGAAGGTTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACATTGGAGCTTGGTGGAAAATCCCCTTTCATCGTATGTGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTATCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAAAGTATATGATGAGTTTGTAGAGAAAGCAAGGAAACGAGCTGCCAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTCGATGGCGAACAATTCAAAAAGATTTTGAGATATATACAATATGGGATTGAAGGTGGAGCCACTCTTGAAGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATGTCCAGCCGACAGTTTTCTCAGACGTCAAGGATGACATGAAAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAGGATATTGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCGGCCGGGGTGTTTACTCAAAATATCGACACAGCCAACAGGCTGACACGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAGTTCCTTTTGGTGGGTACAAGATGAGCGGACATGGGCGAGAAAAGGGCATTTACAGCCTCAGCAATTACCTGCAAATCAAGGCTGTTGTCACTCCTTTGCACAACCCTGCTTGGCTTTAA 1683 46.52 MAARRVSSLLSRSSPAALLSKGRRPSGGRTSGKYSTTAAVEHPITPSVKVNYTQLLINGKFVDSVSGKTFPTLDPRTGEVIAQVAEGDAKDVDLAVSAARKAFDEGPWPRLTAYERSKILLRFADLVEKHVEEIAALETWDNGKTYEQSAKLEVPMFVRLFRYYGGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLSALYVANLLHEVHFGQFTHIYQSPCPYFIVHIYIYIWQAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFAIFFNQGQCCCAGSRTFVHEKVYDEFVEKARKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIQYGIEGGATLEAGGERFGSKGYYVQPTVFSDVKDDMKIAQEEIFGPVQTILKYKDIEEVIRRANASRYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLSNYLQIKAVVTPLHNPAWL 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 70450 73513 + Hsped.10g00020.1 Hepe10g0002 580549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0002 560 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 330 555 IPR016163 GO:0016620(InterPro)
Hepe10g0002 560 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 267 552 - GO:0004029(PANTHER)
Hepe10g0002 560 FunFam Aldehyde dehydrogenase, mitochondrial 42 249 - -
Hepe10g0002 560 FunFam Mitochondrial aldehyde dehydrogenase 2 332 521 - -
Hepe10g0002 560 FunFam Aldehyde dehydrogenase, putative 522 548 - -
Hepe10g0002 560 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 38 329 IPR016162 GO:0016491(InterPro)
Hepe10g0002 560 SUPERFAMILY ALDH-like 48 555 IPR016161 GO:0016491(InterPro)
Hepe10g0002 560 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 354 365 IPR016160 GO:0016491(InterPro)
Hepe10g0002 560 CDD ALDH_F2BC 50 552 - -
Hepe10g0002 560 MobiDBLite consensus disorder prediction 14 36 - -
Hepe10g0002 560 Pfam Aldehyde dehydrogenase family 262 550 IPR015590 GO:0016491(InterPro)
Hepe10g0002 560 Pfam Aldehyde dehydrogenase family 61 244 IPR015590 GO:0016491(InterPro)
Hepe10g0002 560 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 326 333 IPR029510 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0002 K00128 - - csv:101202756 963.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0002 Hepe-Chr10:70450 Hepe04g1389 Hepe-Chr4:69545447 3.73e-40 dispersed
Hepe03g0048 Hepe-Chr3:596891 Hepe10g0002 Hepe-Chr10:70450 8.08e-62 transposed
Hepe09g0747 Hepe-Chr9:7167395 Hepe10g0002 Hepe-Chr10:70450 2.99e-201 transposed
Hepe10g0002 Hepe-Chr10:70450 Hepe09g0192 Hepe-Chr9:1523972 2.81e-304 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0747 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.8 2.3e-214 741.9
Hepe10g0002 . 31 560 Aldehyde Dehydrogenase Gene Family AT3G24503 51.8 8.1e-159 557.4
Hepe09g0192 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.9e-156 548.1
Hepe09g0192 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 79.7 8.2e-258 886.3
Hepe10g0002 . 1 560 Aldehyde Dehydrogenase Gene Family AT3G48000 71.9 3.1e-241 831.2
Hepe09g0747 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.1e-164 575.5
Hepe10g0002 . 1 404 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 1.6e-165 579.3
Hepe09g0192 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 1.0e-164 576.6
Hepe09g0747 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.6e-104 375.6
Hepe01g2295 . 2 415 Aldehyde Dehydrogenase Gene Family AT4G34240 65.9 1.1e-161 567.0
Hepe07g0686 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G34240 50.1 1.4e-132 470.3
Hepe01g2295 . 3 413 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 6.3e-181 630.6
Hepe07g0686 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe08g0118 . 66 482 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe07g0686 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 3.0e-187 651.7
Hepe08g0118 . 4 484 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 2.5e-157 552.4
Hepe08g0653 . 32 536 Aldehyde Dehydrogenase Gene Family AT1G79440 76.8 2.5e-235 811.6
Hepe08g0652 . 32 379 Aldehyde Dehydrogenase Gene Family AT1G79440 75.9 6.8e-156 547.7
Hepe02g0702 . 5 489 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 1.1e-236 816.2
Hepe04g1389 . 177 645 Aldehyde Dehydrogenase Gene Family AT2G14170 65.5 1.5e-183 639.8
Hepe09g0167 . 8 397 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 6.7e-198 687.2
Hepe09g0167 . 8 399 Aldehyde Dehydrogenase Gene Family AT3G48170 83.9 2.8e-204 708.4
Hepe08g2460 . 1 493 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 7.1e-264 906.4
Hepe07g2286 . 21 462 Aldehyde Dehydrogenase Gene Family AT5G62530 81.3 5.2e-223 770.8
Hepe03g0048 . 39 595 Aldehyde Dehydrogenase Gene Family AT3G66658 75.5 3.3e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71