Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0058 ATGGGAGAAACTGGTGTGATTCAGCTTCAGAGAAGTTTAGACCCGGCTGCCCGTGAGTTCAGACCGGGGAACTTCAATAATCTGTTCAACGTCGTCGGGCCGCCGGTTCGTCATGTTTACTATTCGTTCGCCGCTCCGCTTCCACCGCCGTTTAACGAACTACAAGTGGAACCGTTGCCGATTCGAAATTCGGCGTTAACGTATTCCCCTAATTTTCCGGTTAATTTCAATCAGGTGTTTGTTAATCCAGCCGAGGAAATTGCGGTGCCGCCGGTTCAGTCGCTGTCGTCCGGTCCGACTCGGTCGCTGTTACTGAGCGGAGTGCCGAGTGACACGAGCGAGTCAGTGATTCGAAGCGATTTGGAAGGGTTTGGAGATTTGAGAGGAGTTCAGATGGAGAGAATCAGGGATGGAATCGTGACCGTCCATTTTTACGATCTGAGGCATGCAGAGAGGGCGTTTCGAGAGATGAGGAATCAGCATTTGATGCGTCAGAAACAACCCGGCAACCAACATTCTTGGTTTTCGCAGAACAATTTCGACACGCCGCCGCGGTTGGCTCGTGCCCTAATCGGTGGGTATGCTGTGTGGGCTGATTTCGTTGTTCCGGCGAGTAACGCCGCCGTACCCGACGGAAACAACCAGGGGACCGTCGTTGTTTTCAATTTGGAGTTGGATGTCTCCGCCTCTACTCTCAATGAAATCTTCCAGCGTTTTGGTCCCGTGAGGGAATTTAGGGAGACGCCATTGAAGAAGCATCAAAGATTCATCGAGTTTTTTGATGTTAGAGATGCGGCAAAGGCTGTTAAAGAGATGAACGGTAAACAAATCCACAGCAAGCCGGTTGTCGTTGAGTTCAGCCGTCCCGGTGGACATGGCCGGCAATTCTTCAACCCGATGATCGCCACTAGACACCACCACCAGCCCCCTCCGGCTCGACCCTTGAAGCTATCTGGTCGTTTGAACGACGACCCACATCGCCCATTCTATCCACAAGCTCAATTCCCCCCGAAGAAGCTGCATTATATGAGTAGCGGCCCCGAGAACCCGGTCGAGAAGTTGCAGCCATTGAATTGCAATGGAAGTGAAGTTGAAAGAAGGGATTCAGTCGGGACATCGAGGAGGACGAATGCAAAGAAGATCATGAATAGACAATCCCCACCCAGCTTAAAGCAAGAGGCATTTTCTCAACCTAGGATTAGTATTAAGTTGAGGAGAAGCAATTTCTTGAAGAAATCTAATCCTTGTTTCTTAATAAGCGAAAATCCCTTGGAAGAAAAGGCATCCGATTGCAGAGATTCAAGAACCACTGTTATGATCAAGAACATACCCAACAAGTACAGTCTGAAGTTATTAATGAAGACACTGGACAAACACTGCATGGAGTGCAACGATGGCAAGGACGACCTGCCTTTGTCCTCCTATGATTTCGTATATCTTCCTATTGATTTCAAGAATAAATGCAATGTGGGATATGGGTTTGTGAATATGACCTCCCCCCAAGGAGCTTGGAGACTCTACAAAGCTTTCCATCTTCATCCTTGGCAAGTTTTCAACTCTAGAAAGATCTGCCAAGTTACCTATGCTAGACTTCAGGGATTAGAAGCACTGAATGAGCATTTTAGGAACTCAAAATTTCCTAAGGAATTGGAGCAGTTTGAGTTGCCGGTAGTGTTTTCGCCTCCTCGAGACGGCATTCAACTGACGGAGCCTCTTGCCGTCGCTCGTAACATCATGCATATTGGTGGTGATGAAGGAGGAGTAAACCCATCCGACACTGTCGTCACCGCCGCAGACCCGTCATCGGAAGTAGTGCCGTGTGGTGGTGAAAATGGTAATGACAAAGAAGAAGAAGACAGCTAA 1863 48.63 MGETGVIQLQRSLDPAAREFRPGNFNNLFNVVGPPVRHVYYSFAAPLPPPFNELQVEPLPIRNSALTYSPNFPVNFNQVFVNPAEEIAVPPVQSLSSGPTRSLLLSGVPSDTSESVIRSDLEGFGDLRGVQMERIRDGIVTVHFYDLRHAERAFREMRNQHLMRQKQPGNQHSWFSQNNFDTPPRLARALIGGYAVWADFVVPASNAAVPDGNNQGTVVVFNLELDVSASTLNEIFQRFGPVREFRETPLKKHQRFIEFFDVRDAAKAVKEMNGKQIHSKPVVVEFSRPGGHGRQFFNPMIATRHHHQPPPARPLKLSGRLNDDPHRPFYPQAQFPPKKLHYMSSGPENPVEKLQPLNCNGSEVERRDSVGTSRRTNAKKIMNRQSPPSLKQEAFSQPRISIKLRRSNFLKKSNPCFLISENPLEEKASDCRDSRTTVMIKNIPNKYSLKLLMKTLDKHCMECNDGKDDLPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPQGAWRLYKAFHLHPWQVFNSRKICQVTYARLQGLEALNEHFRNSKFPKELEQFELPVVFSPPRDGIQLTEPLAVARNIMHIGGDEGGVNPSDTVVTAADPSSEVVPCGGENGNDKEEEDS 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 550817 553379 - Hsped.10g00580.1 Hepe10g0058 580605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0058 620 SMART rrm1_1 102 166 IPR000504 GO:0003723(InterPro)
Hepe10g0058 620 SMART rrm1_1 217 285 IPR000504 GO:0003723(InterPro)
Hepe10g0058 620 Gene3D - 96 169 IPR012677 -
Hepe10g0058 620 FunFam Terminal EAR1-like 1 379 538 - -
Hepe10g0058 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 167 IPR000504 GO:0003723(InterPro)
Hepe10g0058 620 Pfam RNA recognition motif 2 435 542 IPR007201 -
Hepe10g0058 620 MobiDBLite consensus disorder prediction 599 620 - -
Hepe10g0058 620 PANTHER RNA RECOGNITION MOTIF-CONTAINING 99 566 - -
Hepe10g0058 620 SUPERFAMILY RNA-binding domain, RBD 216 510 IPR035979 GO:0003676(InterPro)
Hepe10g0058 620 SUPERFAMILY RNA-binding domain, RBD 77 164 IPR035979 GO:0003676(InterPro)
Hepe10g0058 620 Pfam RNA recognition motif 218 282 IPR000504 GO:0003723(InterPro)
Hepe10g0058 620 CDD RRM3_EAR1_like 435 533 IPR034458 -
Hepe10g0058 620 Gene3D - 210 295 IPR012677 -
Hepe10g0058 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0058 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0045 Hepe-Chr2:589151 Hepe10g0058 Hepe-Chr10:550817 6.43e-31 transposed
Hepe04g1964 Hepe-Chr4:74484335 Hepe10g0058 Hepe-Chr10:550817 3.67e-40 transposed
Hepe10g0058 Hepe-Chr10:550817 Hepe10g1566 Hepe-Chr10:52364446 5.71e-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54