Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0060 ATGGAAAATCCTATTTTTGTTGTCATTGTAATGTTCAGTCTTGTTCTTGTTCTTCAAATGTTGTTCATTTCTTCTTCTCCAGTTGCTGATCCTGAACTTGTTGTTCAAGAAGTTCTCTCGAGCATCAACAATGCAACAGCAAGAAGGAATTTGGGGTTCCTTTCGTGCGGAACCGGAAATCCAATAGACGACTGTTGGCGGTGCGATCCAAATTGGGAGAAGAATCGAAAGCGGCTAGCCGAGTGCGGCATTGGGTTCGGCAAGCAAGCCATCGGCGGCAAAGACGGCAAATTCTACATAGTCACCGACCCATCCGACAAGGACGTGGTCAACCCAAAACCCGGCACTCTCCGCCACGCCGTAATCCAAAACGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAACTAAAAGCAGAGCTAATCATGAACTCCTTCAAAACCATCGACGGCCGTGGCGTGTCCGTCCACATCGCCGGCGGGCCCTGCATTACCATCCAATTTGTCACCAACATTATAATCCACGGCATCAACATCCACGATTGCAAACAGGGTGGGAATACTTATGTTAGAGATTCGCCGGACCACTACGGTTGGAGGACGCTGTCCGACGGCGACGGCGTGTCCATTTTCGGAGGCAGCCATGTTTGGGTGGATCATTGTTCTTTGTCGAATTGCCGTGATGGGTTGATTGATGCTATTCATGGGTCGACGGCGATTACTATAACGAATAATTATATGACTCATCATAATAAAGTTATGCTTTTGGGACATAGTGATTCCTATACTCAAGATAAGAATATGCAAGTTACCATTGCTTTTAACCATTTTGGAGAGGGGCTCGTGCAGCGAATGCCACGATGCCGACATGGGTATTTTCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCCACTATTAATAGCCAAGGAAATAGATACCTTGCTCCCAACAACGAAGATAGAAAGGAGGTTACGAAGCGGGAGGATGCAGCACAAAGCAAATGGAAGAATTGGAATTGGAGATCGGATGGAGATTTGTTGTTGAATGGAGCATTCTTCACGAGGTCCGGTGCGGGAGCGTCGTCTAGCTACGCGAGAGCATCGAGTTTGAGTGCAAAGTCATCGTCGTTGGTGAGTTCGATAACGGCCGGAGCGGGGGCGCTGAGGTGCCGAACGGGTTCCCGGTGCTAG 1227 48.0 MENPIFVVIVMFSLVLVLQMLFISSSPVADPELVVQEVLSSINNATARRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLAECGIGFGKQAIGGKDGKFYIVTDPSDKDVVNPKPGTLRHAVIQNEPLWIIFKRDMVIKLKAELIMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPDHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITITNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNEDRKEVTKREDAAQSKWKNWNWRSDGDLLLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSITAGAGALRCRTGSRC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 582201 584878 - Hsped.10g00600.1 Hepe10g0060 580607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0060 408 Pfam Pectate lyase 169 323 IPR002022 -
Hepe10g0060 408 PANTHER PECTATE LYASE 18-RELATED 12 405 IPR045032 GO:0030570(InterPro)
Hepe10g0060 408 Gene3D - 59 401 IPR012334 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Hepe10g0060 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Hepe10g0060 408 FunFam Pectate lyase 59 401 - -
Hepe10g0060 408 SUPERFAMILY Pectin lyase-like 44 403 IPR011050 -
Hepe10g0060 408 SMART amb_all 134 331 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0340 Hepe-Chr3:4785313 Hepe10g0060 Hepe-Chr10:582201 6.22e-217 dispersed
Hepe05g1732 Hepe-Chr5:67554278 Hepe10g0060 Hepe-Chr10:582201 2.56e-218 dispersed
Hepe06g1869 Hepe-Chr6:69767915 Hepe10g0060 Hepe-Chr10:582201 2.52e-215 dispersed
Hepe08g1574 Hepe-Chr8:22341687 Hepe10g0060 Hepe-Chr10:582201 2.23e-170 dispersed
Hepe10g0060 Hepe-Chr10:582201 Hepe07g2170 Hepe-Chr7:65960580 3.75e-238 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0060 K01728 - csv:101208076 722.235