Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0104 ATGGCGGAAGAAGAATCCGGAGAGGCTATCCGGCCGGAATTTCCGGCGGGACGAGTGAAGAAGATAATGAAAGTGGACAAGGACGTCGGCAAAGTGAACTCAGAAGCCCTATTTATCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAGAAATCTGCAGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGTAGACATTCGAATCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCATCTCAGCCGTCGGATGCTCCACCGAAGGACGAGAATCGCACTCGCGCTGTCGTTGATAAAGCGGCGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAA 426 53.29 MAEEESGEAIRPEFPAGRVKKIMKVDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAAEKKRKTVKLVDIRIAVKRHRSISDFLLDSLPLPSQPSDAPPKDENRTRAVVDKAAAPEGTRRIDDFFRRSAKTTSAETNES 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1007067 1010014 - Hsped.10g01040.1 Hepe10g0104 580651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0104 141 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
Hepe10g0104 141 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 11 109 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Hepe10g0104 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Hepe10g0104 141 SUPERFAMILY Histone-fold 12 91 IPR009072 GO:0046982(InterPro)
Hepe10g0104 141 MobiDBLite consensus disorder prediction 101 131 - -
Hepe10g0104 141 MobiDBLite consensus disorder prediction 90 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0104 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0045 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.3e-87 318.9
Hepe09g1825 . 78 246 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.1e-53 204.1
Hepe02g0787 . 77 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.4e-52 203.4
Hepe09g1825 . 1 256 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.6 3.9e-55 211.8
Hepe02g0787 . 11 175 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 3.5e-48 188.7
Hepe09g0045 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.5e-43 171.0
Hepe09g1825 . 16 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 8.9e-62 233.8
Hepe02g0787 . 23 219 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.6 6.4e-52 201.1
Hepe09g0045 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.5 1.1e-51 200.3
Hepe09g0045 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.3 8.3e-38 154.1
Hepe09g0045 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 3.4e-81 298.5
Hepe09g1825 . 78 246 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.2e-49 193.7
Hepe02g0787 . 77 228 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.6e-49 192.6
Hepe02g0787 . 41 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.5 1.1e-63 240.0
Hepe09g1825 . 50 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 5.0e-51 198.0
Hepe09g0045 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 1.2e-49 193.4
Hepe10g0104 . 3 136 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.2 2.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56427 PF00808 CBFD_NFYB_HMF 3.40E-18 CL0012 Hepe TF