Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0121 ATGGAGCGCCTTACTCTAATCGCTCTCTTCTTTACCATTCTGCTATCGGCGACGGTACCCTACGGCGTTTCTTCCGATCAAACCAGCGACGCCGACGGCGAAGATCTTCTGATTCGTCAAGTCGTATCCGGTGCCGATGATCGCCTCTTAACCGTCGAGCAACACTTCCAGAACTTCAAACACAAGTTCGGAAAGACCTACGCCACCGATGAGGAGCACGCTTACAGGTTCCGTGTCTTCAAGTCTAACCTACACAGAGCCAAGCGCCTCCAGAAGCTCGATCCCGGCGCTGTCCATGGCGTCACTCGGTTTTCCGATCTCACCGAGTCCGAGTTCCGTACGAACTTCCTCGGAGTGAATCGGCTCCGTCTTCCTGCCGATGCTCAGAAGGCTCCGATCCTTCCTACCGATAACCTAGCCTCCGACTTCGATTGGCGCGACCACGGTGCCGTCACGCCGGTCAAAGATCAGGGTTCTTGTGGATCGTGCTGGTCCTTTAGTGCTACTGGAGCGCTGGAGGGAGCTAATTTCTTGTCATCTGGAAAACTTACTAGTTTGAGCGAGCAACAGCTTGTAGATTGTGATCATGAGTGTGATCCTGAGGAAGCTGGCGCATGCGACGCGGGGTGCGGCGGGGGACTAATGAACTCAGCTTTCGAGTACATATTGAAAGCAGGTGGATTAGAGCGAGAGGAGGACTATCCTTACACTGGGAAAGATCGTGGCCCTTGCAATTTCCAAAATGGCAAAATCGCTGCTTCTCTATCCAACTTCAGTGTCGTTTCTTTAGATGCCGACCAAATTGCAGCAAACTTGCTCAAGAATGGCCCTTTAGCAATTGGAATCAATGCGGCTTTCATGCAGACCTACGTAAAGGGAGTTTCGTGCCCGTACATATGCTCTAAACGAAATCTAGATCATGGAGTATTGCTCGTAGGGTACGGATCTGCTGGCTTCGCTCCGATACGGTTCAAGGAGAAGCCCTACTGGATCATAAAGAACTCTTGGGGACAAAGCTGGGGAGAGAATGGCTACTACTCACTCTGCAAGGGCAACAATATCTGTGGAGCCGAGTCGATGGTCTCGTCCGTCGCTGCTACCCAAAACTGA 1110 51.98 MERLTLIALFFTILLSATVPYGVSSDQTSDADGEDLLIRQVVSGADDRLLTVEQHFQNFKHKFGKTYATDEEHAYRFRVFKSNLHRAKRLQKLDPGAVHGVTRFSDLTESEFRTNFLGVNRLRLPADAQKAPILPTDNLASDFDWRDHGAVTPVKDQGSCGSCWSFSATGALEGANFLSSGKLTSLSEQQLVDCDHECDPEEAGACDAGCGGGLMNSAFEYILKAGGLEREEDYPYTGKDRGPCNFQNGKIAASLSNFSVVSLDADQIAANLLKNGPLAIGINAAFMQTYVKGVSCPYICSKRNLDHGVLLVGYGSAGFAPIRFKEKPYWIIKNSWGQSWGENGYYSLCKGNNICGAESMVSSVAATQN 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1201571 1206951 + Hsped.10g01210.1 Hepe10g0121 580668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0121 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Hepe10g0121 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 305 315 IPR025660 -
Hepe10g0121 369 Gene3D Cysteine proteinases 27 365 - -
Hepe10g0121 369 SMART pept_c1 139 365 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe10g0121 369 Pfam Papain family cysteine protease 140 363 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe10g0121 369 CDD Peptidase_C1A 143 364 IPR039417 -
Hepe10g0121 369 SMART Inhibitor_I29_2 56 112 IPR013201 -
Hepe10g0121 369 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 52 356 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Hepe10g0121 369 Pfam Cathepsin propeptide inhibitor domain (I29) 56 112 IPR013201 -
Hepe10g0121 369 SUPERFAMILY Cysteine proteinases 52 364 IPR038765 -
Hepe10g0121 369 PRINTS Papain cysteine protease (C1) family signature 307 317 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe10g0121 369 PRINTS Papain cysteine protease (C1) family signature 329 335 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe10g0121 369 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe10g0121 369 FunFam Cysteine protease RD19A 36 365 - -
Hepe10g0121 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 329 348 IPR025661 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0121 K01373 - - csv:101210316 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0121 Hepe-Chr10:1201571 Hepe10g0601 Hepe-Chr10:7419353 4.48e-57 dispersed
Hepe10g0121 Hepe-Chr10:1201571 Hepe02g0484 Hepe-Chr2:4735053 2.86e-174 wgd
Hepe10g0121 Hepe-Chr10:1201571 Hepe08g0985 Hepe-Chr8:9320189 1.61e-184 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1030 . . . . . . . . . . . . . . . . . Bhi04g00217 . . . Hepe10g0121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00383 Cam11g0429 Cec11g0423 Cco11g0417 Clacu11g0551 Cmu11g0408 Cre11g0894 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102