Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0122 ATGGATCTACTGCGATCGGAGCCGATGCAATTGGGGCAACTGATCATTCCTAATGAATCAGCGCACCGGACGATTTCTTACCTCGGCGACCTCGGTCTCTTCCAATTCAACGATCTCAATGCGTCTAAAAGTCCATTCCAGCGGACGTATGCTGCTCAGATTAAAAGATGTGGGGAAATGGCTCGCAAGCTACGGTATTTCAGGGAGCATATGACAAGGGCTGGTTTATCGTTGTCATCAAATTCTCTAGGGGATCCTGATTTTGATCTGGATAATTTGGAGGTTAAAATTGGAGAATTTGAGACAGAGTTGTTAGAGATAAATGGCAACAACGAGAAGTTACAACGCAATTATAGCGAGCTATTGGAATATAAGCTTGTACTCCAGAAGGTTGGTGGTTTTTTCCATCTAGCTCAAAGGATAGCTGCAGCTCAGCAAAAAGAACTGGAAGTGCAGCAAAACGGGGAAGGATCCCTGGACAGTCCCTTATTATTGGAACAAGAAATGATAACTGATGCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGAGAAAAGTCAATGGCTTTTGAAAGGATTTTGTTTCGTTCAACTAGGGGAAATGTGTATATGAGACAAGCTGTGGTTGATGGTTCTGTCACTGATCCTGTATCTGGGGACAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGAATAAAATTCTGAAAATATGCGAAGCTTTTGGTGCAAACCGTTATCCATTCACTGATGATTCAAGCAAACAATTTCAGATGATTACAGAGGTGTCTGATAAACTCTCTGAATTGAAGACTACCATTGATGTGGGGCAACTGCATCGAAGAAAACTTTTGCAAACGATTGGCCATCAATACGAGCAGTGGAATCTTCTGGTAAAGAAGGAAAAGTCCGTTTACCACACTTTGAATATGCTCAATGTTGATGTAACAAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTCGCAACAAATCAGATTCAAAGTGTGATGCAGAAGGCAACCTTTGACAGCAAATCACAAATTGAGGCCATCTTTCATGTTTTGCCTACGAAGGCAGCAGCACCAACATATTTCCGCACAAACAAATTTACTTCTTCATTTCAAGAAATCGTGGATGCATATGGGGTTGCTAGGTATCAGGAAGCAAATCCTGGAGTCTACACGATTGTCACCTTCCCTTTCCTTTTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGCTTGTTGCTGGGAACATTATATTTTATAATAAGGGAGAAGAAATTTTCCAGCCAGAAACTTGGAGATATCATTGAAATGACTTTTGGGGGCCGTTATGTTATCATGATGATGGCACTTTTTTCAATCTACACAGGACTGATTTATAATGAATTCTTTTCTGTCCCATTTGAACTGTTTGGGCCTTCTGCGTACGTTTGTCGTGATACTTCATGCAGGGATGCTACTACGATTGGTTTAATAAAGGTTCGTGATACATATCCATTTGGCGTGGATCCTAAGTGGCATGGCACTCGAAGTGAGTTACCTTATCTCAACTCCTTGAAGATGAAGATGTCTATCCTATTGGGAGTAGCTCAAATGAATCTCGGAATTATATTGAGCTTCTTCAATGCAAAATTCTTTGGAGAAAACATTAACATCTGGTTCCAATTTGTTCCACAGATGATATTCTTGAACAGCTTATTCGGTTACCTCTCAGTTCTCATAATTCTAAAATGGTGCTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCTACAGATGATTTAGGGGAAAATCAGCTTTTTCCAGGACAGGATGTTCTTCAGCCTCTGTTACTTCTGTCTGCACTCATAGCTGTGCCATGGATGTTGTTTCCCAAGCCTTTGCTGTTGAAGAAACAACATGAAGAAAGGCACCAAGGTCAATCCTACTCCATACTTCACAGCACAGATGACAATATTGAAGCGAAACAACACGCCGGTTCCCATGGCCACGAGGAGTTTGAGTTCAGTGAGGTCTTTGTACACCAACTTATACATACCATAGAGTTTGTACTTGGTGCAGTTTCTAACACAGCATCCTATCTACGTCTATGGGCCCTCAGGTAA 2166 41.14 MDLLRSEPMQLGQLIIPNESAHRTISYLGDLGLFQFNDLNASKSPFQRTYAAQIKRCGEMARKLRYFREHMTRAGLSLSSNSLGDPDFDLDNLEVKIGEFETELLEINGNNEKLQRNYSELLEYKLVLQKVGGFFHLAQRIAAAQQKELEVQQNGEGSLDSPLLLEQEMITDATKQVKLGYISGLVPREKSMAFERILFRSTRGNVYMRQAVVDGSVTDPVSGDKVEKNVFVIFYSGERAKNKILKICEAFGANRYPFTDDSSKQFQMITEVSDKLSELKTTIDVGQLHRRKLLQTIGHQYEQWNLLVKKEKSVYHTLNMLNVDVTKKCLVGEGWCPVFATNQIQSVMQKATFDSKSQIEAIFHVLPTKAAAPTYFRTNKFTSSFQEIVDAYGVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLGTLYFIIREKKFSSQKLGDIIEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYVCRDTSCRDATTIGLIKVRDTYPFGVDPKWHGTRSELPYLNSLKMKMSILLGVAQMNLGIILSFFNAKFFGENINIWFQFVPQMIFLNSLFGYLSVLIILKWCSGSQADLYHVMIYMFLSPTDDLGENQLFPGQDVLQPLLLLSALIAVPWMLFPKPLLLKKQHEERHQGQSYSILHSTDDNIEAKQHAGSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALR 721
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 1207675 1220090 - Hsped.10g01220.1 Hepe10g0122 580669

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0122 721 PIRSF ATP6V0A1 1 721 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Hepe10g0122 721 Pfam V-type ATPase 116kDa subunit family 27 720 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Hepe10g0122 721 Coils Coil 90 117 - -
Hepe10g0122 721 PANTHER VACUOLAR PROTON ATPASES 1 720 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0122 K02154 - - csv:101209817 1276.54
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0853 Hepe-Chr8:7745608 Hepe10g0122 Hepe-Chr10:1207675 6.73e-320 transposed
Hepe10g0122 Hepe-Chr10:1207675 Hepe02g0483 Hepe-Chr2:4720585 2.37e-254 wgd
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G21410 72.6 1.5e-311 1065.4
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.0 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT2G21410 79.5 5.6e-250 860.9
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT4G39080 73.2 6.3e-310 1060.1
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT4G39080 80.3 1.1e-250 863.2
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.4e-61 230.3
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0129 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.5e-67 250.8
Hepe01g2283 . 1 165 Primary Pumps ATPases(2) AT1G75630 78.5 1.4e-66 249.6
Hepe10g0130 . 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.4e-66 249.6
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe10g0130 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 7.3e-53 203.4
Hepe01g2283 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 9.5e-53 203.0
Hepe10g0129 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Hepe10g0281 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 1.3e-71 266.5
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0281 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.7 8.0e-76 280.4
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07810 80.0 0.0e+00 1344.7
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07670 79.6 0.0e+00 1343.2
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe10g1192 . 22 872 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1082.8
Hepe09g1807 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe10g1189 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe02g0408 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.4
Hepe02g2443 . 1 376 Primary Pumps ATPases(2) AT1G12840 80.3 9.3e-176 613.2
Hepe02g0058 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 2.6e-116 415.2
Hepe10g1401 . 1 261 Primary Pumps ATPases(2) AT3G58730 80.8 5.8e-116 414.1
Hepe08g1504 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 2.4e-207 718.4
Hepe04g1087 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.6e-206 715.7
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe02g0408 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.7 5.5e-269 923.3
Hepe02g1671 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 1.1e-66 250.0
Hepe02g0408 . 9 489 Primary Pumps ATPases(2) AT1G20260 95.8 2.3e-267 917.9
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 1.4e-191 665.6
Hepe02g1671 . 1 229 Primary Pumps ATPases(2) AT4G11150 79.6 3.0e-92 335.1
Hepe03g2130 . 1 623 Primary Pumps ATPases(2) AT1G78900 92.9 0.0e+00 1168.3
Hepe02g0408 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.4
Hepe02g0408 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.7 5.5e-269 923.3
Hepe02g0408 . 9 489 Primary Pumps ATPases(2) AT1G20260 95.8 2.3e-267 917.9
Hepe02g2443 . 1 376 Primary Pumps ATPases(2) AT1G12840 80.3 9.3e-176 613.2
Hepe02g0058 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 2.6e-116 415.2
Hepe10g1401 . 1 261 Primary Pumps ATPases(2) AT3G58730 80.8 5.8e-116 414.1
Hepe02g1671 . 1 229 Primary Pumps ATPases(2) AT4G11150 79.6 3.0e-92 335.1
Hepe02g1671 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.0 2.0e-75 279.3
Hepe02g1671 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 1.1e-66 250.0
Hepe09g1807 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe10g1189 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe08g1504 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 2.4e-207 718.4
Hepe04g1087 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.6e-206 715.7
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G21410 72.6 1.5e-311 1065.4
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.0 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT2G21410 79.5 5.6e-250 860.9
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT4G39080 73.2 6.3e-310 1060.1
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT4G39080 80.3 1.1e-250 863.2
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.4e-61 230.3
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 7.3e-53 203.4
Hepe01g2283 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 9.5e-53 203.0
Hepe10g0129 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0129 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.5e-67 250.8
Hepe01g2283 . 1 165 Primary Pumps ATPases(2) AT1G75630 78.5 1.4e-66 249.6
Hepe10g0130 . 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.4e-66 249.6
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe10g0281 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.7 8.0e-76 280.4
Hepe10g0281 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 1.3e-71 266.5
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 1.2e-198 689.1
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 1.4e-191 665.6
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07810 80.0 0.0e+00 1344.7
Hepe10g1192 . 22 872 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1082.8
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07670 79.6 0.0e+00 1343.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115