Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0123 ATGGCTGGGTTCTTCTATCTAGGAGGGAGATCAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAATTTGTTTTTGTACAGAAATGAAGAGATCTACAACTCCAACAACAACAACATCAACAAGGGTTTTGAGATATGGCCTCAACATCATCAACAACAACAACAACAATTCCCCAATCACACCCAACAAAACCCTTCTCTTGCAAATCACTTGTCTTTCGGCGTCGGTCCAAGCCGTCGCAGCTTCATGATCAACGACACCGATCATGATCCCTCCTCTCGATCCGCCTTCACCGTCATGAGGCCTGCCGCCTTCGCTTCCGCGGCTGCTGCTGCAGCAGCAGCCGCGGGAGGCATGAATTGCCAAGATTGCGGTAATCAAGCCAAGAAAGATTGCGCTTATTTGAGATGTAGGACTTGCTGTAAGAGTCGAGGGTTTCAGTGTCAAACCCACGTGAAGAGCACGTGGGTTCCCGCTGCCAAGCGTCGCGAAAGGCAGCAACAAATTGCTGCCTTGCAACATCAGCAGCAAGAGCAATTTCGTGGCGGTGGCGGCGGCGGCGGTGGTGAGAATTCTAAAAGACTAAGAGAAACTCATATCGCCACCGCCGTCACTCCCGCCACCGCTTGCCCTCGGTTGCCCTCCATCACGTCAGGGTTAGAGCTGTCGCAATTTCCATCAGAAGTGAACTCTCCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGCTGGCCACATGTTTAAAGGAATTCTCTACGATCAAGGCCCTGAAGTCCGTTACACAGCTGCCGGCGAGAGCTCCTCCGGCCACGGCGGAGACGGATCAGGACACCCACTTAACCTAATTGCCGGACCCTCCAACGCCGCCGCCACTTCCGCCACTACCTCCGCCGCAACCAGTACTCCGTTGCTCGACCCTTCTATATATCCAGCTCCTCTCAATGCATTTTTGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTAG 1047 52.44 MAGFFYLGGRSEGPPNKQEEEEEREQNLFLYRNEEIYNSNNNNINKGFEIWPQHHQQQQQQFPNHTQQNPSLANHLSFGVGPSRRSFMINDTDHDPSSRSAFTVMRPAAFASAAAAAAAAAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQHQQQEQFRGGGGGGGGENSKRLRETHIATAVTPATACPRLPSITSGLELSQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIAGHMFKGILYDQGPEVRYTAAGESSSGHGGDGSGHPLNLIAGPSNAAATSATTSAATSTPLLDPSIYPAPLNAFLAGTQFFPPSR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1239227 1240649 - Hsped.10g01230.1 Hepe10g0123 580670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0123 348 MobiDBLite consensus disorder prediction 178 198 - -
Hepe10g0123 348 NCBIfam putative zinc finger domain, LRP1 type 125 167 IPR006510 -
Hepe10g0123 348 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 343 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Hepe10g0123 348 MobiDBLite consensus disorder prediction 282 306 - -
Hepe10g0123 348 NCBIfam LRP1 C-terminal domain 229 277 IPR006511 -
Hepe10g0123 348 MobiDBLite consensus disorder prediction 1 25 - -
Hepe10g0123 348 Pfam Domain of unknown function (DUF702) 123 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0694 Hepe-Chr7:8284447 Hepe10g0123 Hepe-Chr10:1239227 9.48e-44 dispersed
Hepe08g0153 Hepe-Chr8:1338012 Hepe10g0123 Hepe-Chr10:1239227 1.64e-32 dispersed
Hepe09g1164 Hepe-Chr9:13937303 Hepe10g0123 Hepe-Chr10:1239227 2.53e-32 dispersed
Hepe01g1646 Hepe-Chr1:81667132 Hepe10g0123 Hepe-Chr10:1239227 1.53e-82 wgd
Hepe10g0123 Hepe-Chr10:1239227 Hepe04g1564 Hepe-Chr4:71167132 3.36e-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56428 PF05142 DUF702 2.80E-67 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0123 K27807 - csv:101213154 468.003