Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0142 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTCAGATTTCATCTCCTCCGCTCTCAATCTCACCATCGCCACATGTCGTCTTCGTCTTCTTCTTCTTCAGCTCCAGCTCTTCCTCCGTGTTTCCTTCAGCAGCACCGGCCTTCTCCGCCATCGGATCAATCCAACGCTTGCCACGGCCGTCTCGCTCCCGACGCACATTCTACAGTTGCTACGCTCGACTTGAAGCGAACATATATTAATGACTGTGAGGCTTCGGCTAGCATACGAGCTGTAGCTTCTGAACAGAGGATGCGATTTAATGATTCTTCTTGTGAACCAGTATCAATTCCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAATCTAGGACTCAAAAATCAATAGATGAGCCTCTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGACGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTGAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTACAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTATATTAAAGGCTGAAGTTAAAAGTTTACATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTGGAGGAACATGCAAATCACAGAAGGAACCTTTTTATAACAGAAGAAGATATCTTGCGAATTCCTTCCCTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCTCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGATTGATCATCAAAAGCACCACTGGACCAATTGATTTATACCTCTTGAGGACTGAAAAACAAGGGCTGGAAGAAAATACTTCCAAGCAAGCGAAACTGTCTTCTGAACTGCAGAAGAATCCTAACATATCTACCAACTATGCATGTTCTCCTTTTCGGGAATTTCAGGGTGGAATGCAGAGAATTTTACCTTTACATAATAATAATATAGACGATGATTATTGGTTTGAATCAAATTCACAAGTGAGCATTACGCATTTATGGGGCGAGGAACACAACTTTTAA 1233 42.5 MSNAVEDLILRHRHSDFRFHLLRSQSHHRHMSSSSSSSSAPALPPCFLQQHRPSPPSDQSNACHGRLAPDAHSTVATLDLKRTYINDCEASASIRAVASEQRMRFNDSSCEPVSIPNEKQNKKLKLQKNSKSRTQKSIDEPLDGPNLSTNGRYDSSLGFLTKKFIRLVQDAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLTEKTTTNHIRWKGCERRGPQELNDQVGILKAEVKSLHADERRLDELIRMKQELLRNLEEHANHRRNLFITEEDILRIPSLKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTEKQGLEENTSKQAKLSSELQKNPNISTNYACSPFREFQGGMQRILPLHNNNIDDDYWFESNSQVSITHLWGEEHNF 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1479295 1489601 - Hsped.10g01420.1 Hepe10g0142 580689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0142 410 FunFam E2F transcription factor 1 146 219 - -
Hepe10g0142 410 Gene3D - 224 335 - -
Hepe10g0142 410 Pfam E2F/DP family winged-helix DNA-binding domain 154 217 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe10g0142 410 CDD E2F_DD 228 335 IPR032198 GO:0046983(InterPro)
Hepe10g0142 410 MobiDBLite consensus disorder prediction 28 66 - -
Hepe10g0142 410 Coils Coil 240 267 - -
Hepe10g0142 410 MobiDBLite consensus disorder prediction 105 150 - -
Hepe10g0142 410 SUPERFAMILY Winged helix DNA-binding domain 152 215 IPR036390 -
Hepe10g0142 410 SMART E2F_TDP_2 152 217 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe10g0142 410 SUPERFAMILY E2F-DP heterodimerization region 229 333 IPR037241 -
Hepe10g0142 410 PANTHER TRANSCRIPTION FACTOR E2F 91 405 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Hepe10g0142 410 MobiDBLite consensus disorder prediction 28 44 - -
Hepe10g0142 410 Gene3D - 147 219 IPR036388 -
Hepe10g0142 410 Pfam E2F transcription factor CC-MB domain 233 332 IPR032198 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0198 Hepe-Chr8:1815151 Hepe10g0142 Hepe-Chr10:1479295 3.47e-67 dispersed
Hepe09g0165 Hepe-Chr9:1318445 Hepe10g0142 Hepe-Chr10:1479295 2.08e-07 dispersed
Hepe10g0142 Hepe-Chr10:1479295 Hepe04g1065 Hepe-Chr4:65315359 3.46e-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56433 PF16421 E2F_CC-MB 1.20E-25 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0142 K06620 - csv:101211469 616.69