Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0142 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTCAGATTTCATCTCCTCCGCTCTCAATCTCACCATCGCCACATGTCGTCTTCGTCTTCTTCTTCTTCAGCTCCAGCTCTTCCTCCGTGTTTCCTTCAGCAGCACCGGCCTTCTCCGCCATCGGATCAATCCAACGCTTGCCACGGCCGTCTCGCTCCCGACGCACATTCTACAGTTGCTACGCTCGACTTGAAGCGAACATATATTAATGACTGTGAGGCTTCGGCTAGCATACGAGCTGTAGCTTCTGAACAGAGGATGCGATTTAATGATTCTTCTTGTGAACCAGTATCAATTCCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAATCTAGGACTCAAAAATCAATAGATGAGCCTCTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGACGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTGAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTACAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTATATTAAAGGCTGAAGTTAAAAGTTTACATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTGGAGGAACATGCAAATCACAGAAGGAACCTTTTTATAACAGAAGAAGATATCTTGCGAATTCCTTCCCTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCTCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGATTGATCATCAAAAGCACCACTGGACCAATTGATTTATACCTCTTGAGGACTGAAAAACAAGGGCTGGAAGAAAATACTTCCAAGCAAGCGAAACTGTCTTCTGAACTGCAGAAGAATCCTAACATATCTACCAACTATGCATGTTCTCCTTTTCGGGAATTTCAGGGTGGAATGCAGAGAATTTTACCTTTACATAATAATAATATAGACGATGATTATTGGTTTGAATCAAATTCACAAGTGAGCATTACGCATTTATGGGGCGAGGAACACAACTTTTAA 1233 42.5 MSNAVEDLILRHRHSDFRFHLLRSQSHHRHMSSSSSSSSAPALPPCFLQQHRPSPPSDQSNACHGRLAPDAHSTVATLDLKRTYINDCEASASIRAVASEQRMRFNDSSCEPVSIPNEKQNKKLKLQKNSKSRTQKSIDEPLDGPNLSTNGRYDSSLGFLTKKFIRLVQDAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLTEKTTTNHIRWKGCERRGPQELNDQVGILKAEVKSLHADERRLDELIRMKQELLRNLEEHANHRRNLFITEEDILRIPSLKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTEKQGLEENTSKQAKLSSELQKNPNISTNYACSPFREFQGGMQRILPLHNNNIDDDYWFESNSQVSITHLWGEEHNF 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1479295 1489601 - Hsped.10g01420.1 Hepe10g0142 580689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0142 410 FunFam E2F transcription factor 1 146 219 - -
Hepe10g0142 410 Gene3D - 224 335 - -
Hepe10g0142 410 Pfam E2F/DP family winged-helix DNA-binding domain 154 217 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe10g0142 410 CDD E2F_DD 228 335 IPR032198 GO:0046983(InterPro)
Hepe10g0142 410 MobiDBLite consensus disorder prediction 28 66 - -
Hepe10g0142 410 Coils Coil 240 267 - -
Hepe10g0142 410 MobiDBLite consensus disorder prediction 105 150 - -
Hepe10g0142 410 SUPERFAMILY Winged helix DNA-binding domain 152 215 IPR036390 -
Hepe10g0142 410 SMART E2F_TDP_2 152 217 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe10g0142 410 SUPERFAMILY E2F-DP heterodimerization region 229 333 IPR037241 -
Hepe10g0142 410 PANTHER TRANSCRIPTION FACTOR E2F 91 405 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Hepe10g0142 410 MobiDBLite consensus disorder prediction 28 44 - -
Hepe10g0142 410 Gene3D - 147 219 IPR036388 -
Hepe10g0142 410 Pfam E2F transcription factor CC-MB domain 233 332 IPR032198 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0142 K06620 - - csv:101211469 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0198 Hepe-Chr8:1815151 Hepe10g0142 Hepe-Chr10:1479295 3.47e-67 dispersed
Hepe09g0165 Hepe-Chr9:1318445 Hepe10g0142 Hepe-Chr10:1479295 2.08e-07 dispersed
Hepe10g0142 Hepe-Chr10:1479295 Hepe04g1065 Hepe-Chr4:65315359 3.46e-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56433 PF16421 E2F_CC-MB 1.20E-25 No_clan Hepe TF