Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0162 ATGGGATTTCTTCAAACCCATTTTCTTCCTCCTTCTTCTTTTTTGTTTCTGTCTCTGCTTTTCATCATCTTCTTTACAGGTGTTTCTGGAGCTGCATTTACATTAGTAAACAAGTGCGATTACACAGTTTGGCCGGGAACTCTTGGAAATTCCCAATTGGAATCCACTGGATTTGAGCTCTCTCCGGGGGCGGCGCGTTCACTCCACGCGCCTCCAGGTTGGTCCGGTAGATTCTGGGGCCGTACCGGATGTTCTTTCGACCCGGCCACTGGTCAGGGAAGCTGCCAGACCGCCGACTGTGGCTCTAACCAAATGGAATGCAATGGCGCCGGAGCCACACCGCCGGCGACCTTGGCCGAGTTCACTATTGGCTCCGCCGCGCAGGACTTTTACGACGTCAGCTTGGTCGACGGCTACAATATTCCGATGGTCGTGGACGCCACCGGTGGGAGCGGTGCGTGTCAGTCGACTGGGTGCGCGACGGACCTGAACCGGCGGTGCCCGCCGGAGCTACGCGCTGGCGAGGGGAAGGCGTGTAAGAGCGCGTGTGAGGCGTTTGGGAACCCGGAGTACTGCTGCAGCGGCGCGTTTAACTCACCCGCCGCCTGTAAGCCGTCGGCGTACTCGGAAATGTTCAAATCAGCTTGCCCAAAATCGTATAGCTACGCCTTTGATGATGCAACAAGTACTTTTACTTGCAGTGGTGCGGATTACACCATTACATTCTGTCCTTCATCAGCAAGCCAAAAATCAAAAAGAGACGCATCAAGCGGCGGAGGAGATGGGCCGTCGGTGTCGTTCAACAGTTCATGGCTGCCGGACTTCATCACCGGAGGAGGATCATCCAAAACAATGCTTTTCTCTTCAACTTTGAATTGGACATTATATTTTAAAGAAATTGTTGAGAAAGAATCTTAA 918 53.05 MGFLQTHFLPPSSFLFLSLLFIIFFTGVSGAAFTLVNKCDYTVWPGTLGNSQLESTGFELSPGAARSLHAPPGWSGRFWGRTGCSFDPATGQGSCQTADCGSNQMECNGAGATPPATLAEFTIGSAAQDFYDVSLVDGYNIPMVVDATGGSGACQSTGCATDLNRRCPPELRAGEGKACKSACEAFGNPEYCCSGAFNSPAACKPSAYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSASQKSKRDASSGGGDGPSVSFNSSWLPDFITGGGSSKTMLFSSTLNWTLYFKEIVEKES 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1660582 1662815 + Hsped.10g01620.1 Hepe10g0162 580709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0162 305 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Hepe10g0162 305 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Hepe10g0162 305 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Hepe10g0162 305 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Hepe10g0162 305 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Hepe10g0162 305 CDD TLP-PA 33 243 - -
Hepe10g0162 305 Gene3D Thaumatin 31 244 IPR037176 -
Hepe10g0162 305 FunFam THAUMATIN-LIKE PROTEIN 1 31 244 - -
Hepe10g0162 305 PANTHER OS03G0233200 PROTEIN 19 244 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Hepe10g0162 305 SMART tha2 33 244 IPR001938 -
Hepe10g0162 305 SUPERFAMILY Osmotin, thaumatin-like protein 32 245 IPR037176 -
Hepe10g0162 305 ProSiteProfiles Thaumatin family profile. 30 244 IPR001938 -
Hepe10g0162 305 Pfam Thaumatin family 37 244 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0279 Hepe-Chr8:2526979 Hepe10g0162 Hepe-Chr10:1660582 3.63e-121 dispersed
Hepe10g0162 Hepe-Chr10:1660582 Hepe10g0674 Hepe-Chr10:8941636 2.84e-85 dispersed
Hepe10g0160 Hepe-Chr10:1635964 Hepe10g0162 Hepe-Chr10:1660582 5.68e-100 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116