Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0165 ATGGGGTTGTTTAGTAGTATACTGGGTTTCTTTGGCTTTGGCTTGGGAACCTCGATTGGGCTTGTGGCTGGATATTACATGTTCATCTATTTTCAGCCATCAGATGTCAAGGATCCTATTGTTCGCCCGTTGGTTGAGCAAGATTCTAACTCATTGTTGCGGATGATGCCAGAAATACCTCTGTGGGTGAAAAATCCCGATTACGATCGTGTTGACTGGCTCAACAAATTTATTGAAAATATGTGGCCTTACTTGGACAAGGCCATTTGCAAGACAGTGAAAAATATAGCAAAGCCTATTATTGCAGAACAAATTCCAAAATACAAAATCGAGGCCGTTGAGTTTGACACACTTACATTGGGCTCCTTACCACCCACTTTTCAAGGAATGAAAGTTTATATGACTGATGATAAAGAGCTGATCATGGAACCATGTATGAAGTGGGCGGGAAATCCGAATGTTACTGTTTCAGTGAAAGCATTTGGATTGAAAGCGACAGTTCAGGTGGTTGATTTGCAAGTATTTGCTATTCCTCGTATAACCCTGAAGCCCTTGGTCCCAACGTTTCCTTGCTTTGCCAAAATATTTGTTTCTCTCATGGAGAAGCCTCATGTTGATTTTGGACTGAAATTGCTCGGTGCAGATGCGATGTCCATCCCAGGGCTGTATAGGTTTGTTCAGGAACTTATAAAAGACCAAGTTGCCAATATGTACCTATGGCCTAAGGCCCTCGAAGTACCGATAATGGATCCTGCGAAAGCCATGAAGAAACCTGTTGGCATCCTTCATGTGAAGGTTGTGAAAGCATTGAAGCTAAAAAAGAAAGATCTATTTGGGGCATCTGATCCATATTTAAAACTGAAGCTGACTGAAGACAAGCTTCCTTCTAAGAAAACAACTGTGAAACACACTAATCTGAATCCAGTATGGAATGAGGATTTTACTTTCGTCGTGAAAGATCCCGAGTCTCAAGCTTTGGAACTGATTCTTTACGATTGGGAGCAGGTTGGGAAGCACGATAAGATGGGAATGAACGTTGTTCCATTGAAAGAACTTACACCTGACGAGTCCAAGGAATTTACTCTCGACGTATTGAAAAATATGGATCTTAATGATACGCAAAACGAGAAGTTGAGAGGGCAGCTTGTTGTGGAATTGTTGTACAAACCTTTCAAGGACAATGAAGCTCCAAAAGATGTTGATGAGGAAGATGCAGTACAAAAGGCTCCTGATGGAACGCCCGATGGGGGAGGCTTGCTCGTTGTCATGATCCATCAAGCTGAAGATGTGGAAGGGAAACATCATACAAACCCCTATGTCCGGTTACTTTTCAGAGGCGAGGAGAAAAGAACCAAGCATGTTAAGAAGAACCGGGATCCAAGATGGGACGAGGAGTTTCAGTTTATGCTGGAGGAGCCGCCTGTCAACGATCGGATTCATGTGGAAGAACCTTTGGGCTATGTGGACATAAACTTAGCTGATGTTGTCTCAAACAAGAGGATTAATGCGAAGTATCATCTCATCGACTCGAAGAACGGTCGGATCCAAATCGAGCTACAATGGAGAACTTCATCATAG 1578 42.78 MGLFSSILGFFGFGLGTSIGLVAGYYMFIYFQPSDVKDPIVRPLVEQDSNSLLRMMPEIPLWVKNPDYDRVDWLNKFIENMWPYLDKAICKTVKNIAKPIIAEQIPKYKIEAVEFDTLTLGSLPPTFQGMKVYMTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRITLKPLVPTFPCFAKIFVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKALEVPIMDPAKAMKKPVGILHVKVVKALKLKKKDLFGASDPYLKLKLTEDKLPSKKTTVKHTNLNPVWNEDFTFVVKDPESQALELILYDWEQVGKHDKMGMNVVPLKELTPDESKEFTLDVLKNMDLNDTQNEKLRGQLVVELLYKPFKDNEAPKDVDEEDAVQKAPDGTPDGGGLLVVMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFMLEEPPVNDRIHVEEPLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTSS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1690930 1694882 - Hsped.10g01650.1 Hepe10g0165 580712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0165 525 CDD SMP_SYT 60 248 - -
Hepe10g0165 525 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Hepe10g0165 525 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Hepe10g0165 525 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289(InterPro)
Hepe10g0165 525 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 522 IPR035892 -
Hepe10g0165 525 Gene3D C2 domain 255 412 IPR035892 -
Hepe10g0165 525 ProSiteProfiles C2 domain profile. 400 522 IPR000008 -
Hepe10g0165 525 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Hepe10g0165 525 Gene3D C2 domain 419 524 IPR035892 -
Hepe10g0165 525 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 523 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
Hepe10g0165 525 CDD C2 278 359 - -
Hepe10g0165 525 MobiDBLite consensus disorder prediction 395 414 - -
Hepe10g0165 525 CDD C2 420 507 - -
Hepe10g0165 525 MobiDBLite consensus disorder prediction 395 409 - -
Hepe10g0165 525 Pfam C2 domain 419 482 IPR000008 -
Hepe10g0165 525 Pfam C2 domain 260 360 IPR000008 -
Hepe10g0165 525 FunFam Synaptotagmin-2 isoform A 255 410 - -
Hepe10g0165 525 PRINTS C2 domain signature 326 334 IPR000008 -
Hepe10g0165 525 PRINTS C2 domain signature 277 289 IPR000008 -
Hepe10g0165 525 PRINTS C2 domain signature 304 317 IPR000008 -
Hepe10g0165 525 SMART C2_3c 261 361 IPR000008 -
Hepe10g0165 525 SMART C2_3c 419 504 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0165 K28063 - - csv:101203849 974.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2950 Hepe-Chr2:78751838 Hepe10g0165 Hepe-Chr10:1690930 9.35e-152 dispersed
Hepe08g0289 Hepe-Chr8:2616849 Hepe10g0165 Hepe-Chr10:1690930 9.84e-285 dispersed
Hepe10g0165 Hepe-Chr10:1690930 Hepe02g0429 Hepe-Chr2:4132222 1.94e-298 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1144 . . . . . . . . . Cmo12g00352 . . . Car12g00378 Sed11g1098 . Cpe07g00356 Bhi04g00131 Tan02g2840 Cmetu02g0262 . Hepe10g0165 . Lcy13g1902 Cla08g01413 Cam08g1892 Cec08g1469 Cco08g1602 Clacu08g1584 . Cre08g1367 Cone4ag1543 . Cone17ag1416 . . . . Cme03g01869 Blo17g00739 . Bda08g01211 Bda01g01538 Bpe02g01735 . . . . . . Cma12g00400 . . . . . . . . . . . . . . . . . . . Lsi08g01308 . Chy03g01373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96