Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0189 ATGGCCATACAGAGTTTGGAAATGGCTCCAGGGATCAAAGGGAGGAAGATCACTTGGATAAATAAAAATGAACAAATGTTGGGTTTTGTACAATCCATTATTTTGAGCCAAAATGAAGCCAAAGAACCCTTTTACATACTTGACCTAGGGTTCCTCATCAATCTCATCCACAAATGGGCTCGTGATCTTCCAATGATTCAACCTTATTACGCCGTCAAGTGCAACCCTAACATAGCATTTCTCGGTGCCATGGCCGCCCTTGGCTCTAGCTTCGATTGTGCCAGCCGAGCCGAGATCGAATCCGTTATGGCTCTTGGAGTGTCGTCGGATCGAATCATCTTTGCCAACCCTTGCAAGGCGGAGTCCCACATCAAGTATGCCGCTAGTGTCGGCGTTAACTTGACCACTTTCGACTCCATAGCTGAAGTGAAGAAGATCAAAAGATGTCACCCGAAATGTGCATTGTTGATCCGAATCAAAGTTGTGGACGATAGTATGTCACGGTCTCCATTGAGCTCCAAGTATGGTGCACTCCCAAGCGAGATAGAGTCGCTCCTACAAGTTGCTAAAGCTGCACAACTCGAAGTTGTCGGTGTTTCGTTCCATATTGGAAGCGGAGGTAGTGACGCATGCGCTTATCGCATCGCCATAGGTGTCGTCAAAGCAGTGTTTGACACTACCGTTCGTTTGGGGATGTCAAAGATGAAGGTGCTCAACATAGGAGGCGGCTTCACGGCCGGCCCGCACTTCGACACGGCCGTCGTGGCGATTAAAGAAGCGATCTCGGAGCATTTCTCCGAGGAAGAAGGGTTGATTATGATGGCGGAGCCGGGGAGGTTTTTTGCAGAGAAATGTTTTACATTGGCAACGAACATAATTGGGAAGAGAGTGAGGAAAGATCGTAGAGAGTATTGGATAACAGATGGGATATATGGCTCCATGAATTGCATTGTCAACGATCACGCGGTTGTCACGTGCACCCCATTAGCCACTGTGTCAAACCCTAAAAATCCGACGTGTCGAAATGCTGACGTGTACAAAACGACTGTGTTTGGACCAACATGCGATGCTTTTGATACAATTTCAACTAGTTATTGGCTACCGGATATGGAAGTGGATGATTGGTTGTTATTTCCTAACATGGGTGCCTACACGTCATCAACGGGCTCGAACTTCAATGGATTTGCCACCTCCTCCATATCCACTAACCTTGCTTACTCGAATTGCTTTCGGGAAAATTTCTAG 1245 47.07 MAIQSLEMAPGIKGRKITWINKNEQMLGFVQSIILSQNEAKEPFYILDLGFLINLIHKWARDLPMIQPYYAVKCNPNIAFLGAMAALGSSFDCASRAEIESVMALGVSSDRIIFANPCKAESHIKYAASVGVNLTTFDSIAEVKKIKRCHPKCALLIRIKVVDDSMSRSPLSSKYGALPSEIESLLQVAKAAQLEVVGVSFHIGSGGSDACAYRIAIGVVKAVFDTTVRLGMSKMKVLNIGGGFTAGPHFDTAVVAIKEAISEHFSEEEGLIMMAEPGRFFAEKCFTLATNIIGKRVRKDRREYWITDGIYGSMNCIVNDHAVVTCTPLATVSNPKNPTCRNADVYKTTVFGPTCDAFDTISTSYWLPDMEVDDWLLFPNMGAYTSSTGSNFNGFATSSISTNLAYSNCFRENF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1892385 1894222 - Hsped.10g01890.1 Hepe10g0189 580736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0189 414 SUPERFAMILY Alanine racemase C-terminal domain-like 273 399 IPR009006 GO:0003824(InterPro)
Hepe10g0189 414 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 70 88 IPR022653 -
Hepe10g0189 414 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 54 282 IPR022644 GO:0003824(InterPro)
Hepe10g0189 414 Gene3D Alanine racemase 52 281 IPR029066 -
Hepe10g0189 414 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 70 88 IPR000183 GO:0003824(InterPro)
Hepe10g0189 414 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 90 102 IPR000183 GO:0003824(InterPro)
Hepe10g0189 414 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 193 206 IPR000183 GO:0003824(InterPro)
Hepe10g0189 414 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 273 292 IPR000183 GO:0003824(InterPro)
Hepe10g0189 414 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 382 395 IPR000183 GO:0003824(InterPro)
Hepe10g0189 414 SUPERFAMILY PLP-binding barrel 42 284 IPR029066 -
Hepe10g0189 414 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 20 408 IPR002433 GO:0004586(PANTHER)|GO:0005737(PANTHER)|GO:0006596(InterPro)|GO:0033387(PANTHER)
Hepe10g0189 414 FunFam Ornithine decarboxylase 52 281 - -
Hepe10g0189 414 PRINTS Ornithine decarboxylase signature 142 164 IPR002433 GO:0006596(InterPro)
Hepe10g0189 414 PRINTS Ornithine decarboxylase signature 42 66 IPR002433 GO:0006596(InterPro)
Hepe10g0189 414 PRINTS Ornithine decarboxylase signature 68 95 IPR002433 GO:0006596(InterPro)
Hepe10g0189 414 PRINTS Ornithine decarboxylase signature 112 136 IPR002433 GO:0006596(InterPro)
Hepe10g0189 414 PRINTS Ornithine decarboxylase signature 308 321 IPR002433 GO:0006596(InterPro)
Hepe10g0189 414 PRINTS Ornithine decarboxylase signature 349 359 IPR002433 GO:0006596(InterPro)
Hepe10g0189 414 PRINTS Ornithine decarboxylase signature 369 382 IPR002433 GO:0006596(InterPro)
Hepe10g0189 414 CDD PLPDE_III_ODC 41 400 - -
Hepe10g0189 414 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 231 245 IPR022657 -
Hepe10g0189 414 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 39 400 IPR009006 GO:0003824(InterPro)
Hepe10g0189 414 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 283 382 IPR022643 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0189 K01581 - - vvi:100232922 525.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0188 Hepe-Chr10:1886035 Hepe10g0189 Hepe-Chr10:1892385 1.53e-178 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003217 0 2 0 0 0 3 1 3 2 1 2 2 2 1 1 2 2 1 2 3 1 1 2 2 1 3 4 2 1 3 50