Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0196 ATGAGGAGAAGAAAGGGTTTGATCAGAATTGGTTTTGGGGTGTTGGTGATTGTTCTTTTCCTTAATATGTTACTCATGGCCGCGACCGTGACGGCGCAGGAGGAGGAGGAGGCGGTGACGGTGGCGGCGACTAAAGGCGGAGAAAGTGAAAGTGAAGCTGATTTCTATTCTTCTCGGAGTCGTTACAAAACCAGACTCATTCTCAACACCATTGACTCCAATGGCACTGTTGTTGATGCAGCTGCCGCAGCTTTAGATTTGATAAAGAAAGAGGAAGTACAAGCCATTATAGGACCAACAAGTTCCATGCAAGCCAGCTTCATGATCGACGTTGGAGAAAAAGCAAATGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACAACCCATCGGAGCCCTTTCTTCTTTCGAGTCGCCCAAGAAGATTCCTCTCAAGTAAAAGCCATTGGAGACATCGTCAAGGCCTTCAAATGGCGACAAGTCGTCCCGATCTATGTCGACAATGAGTTCGGCGACGGAATCATCCCTTACCTTGTCGGTGCTTTACAAGAAGTCGATGCAAATGTGCCCTACCAAAGCATCATCTCTCCCACCGCCACCGACGATCATATCAACGTCGAACTTCTCAAGTTGATGACGATGCAGACTCGAGTGTTTGTGGTGCACATGTTACCTAACCTTGCATCTAGACTCTTCACCATAGCAAGAAAGATCGGAATGATGACTCGAGGCTATGTTTGGATAACGACGGATGCTATCACAAACGAGTTCGATTCAATAGAACCGTTTACTCTCGAGTCGATGCAAGGAGTATTGGGAATAAGAACTTACACCCCAGGAATCAAAAGGCTTGAAACCTTCAAACGTGGTTGGGAAAGGAGATTTCTAGGGTATTATCCAACGATAGAAGAAATTCCAAAGCTAAATGTGTTTGGATTATGGGCTTATGATGCTGCTTGGGCGCTGGCCATCGCTGTGGAGAAGGCTGGCACAGACAATCTTCAATACAACAAGACCAATGATGTTACCACCATGAAAATGAACTCGTCAAACTATCTTTATAACCTCGGCGTCAATCGAAATGGTCCGAAATTGCGAGATGCCTTCTCAAATGTCAAGTTTAAGGGCTTGGCCGGTGAGTTCAGTCTCACAGATGGTCAATTACAATCGTTTGTTTTCGAGATAGTGAATGTGATCGGTAATGATAGAAGAAACGTCGGGTTTTGGTCCCCGGAAACGGGGCTGACGAAGAAACTACGGGGCTCCAGCGGGTTGCGACCGATCATCTGGCCCGGAGATTTGGAAAATAAAGCACCAAAAGGGTGGGAGATTCCAACGGATGGGAAGAAGTTGAGAGTTGGGGTTCCAGTGAAAGATGGATTTTATGAGTTTGTGAATGTGGTTCGTGATCCTAAAACTAACGAAACAGAAGTGAGTGGATATTGCATAGATGTGTTCAAGGCTGTGATTGAAGCTTTGCCTTATGCTGTTGCTTATGAGTTCATTCCTAATGACAAATCTAATGCAAACCCTGGTGGCAGCTACAATGACTTAACTTATCAGCTCTTCCTTGGGAAGTTTGATGCTGTGGTAGGTGACATAACAATTCGAGGGAACAGATCTGATTACATAGACTACACATTGCCATTCACAGAATCCGGCGTGTCGATGGTTGTGCCGATGAAAAGCAGCAAGAACACAAGCCCCTGGGCTTTCTTAAAGCCTCTTACTGGGAAGTTATGGGCGCTTGTAGGCGGCTTCTTCTTCTTCGTGGCATTTGTTGTTTGGATACTTGAACATCGAATCAACACAGCCTTTAGAGGACGTGCTTGGGATCAGATTTGCACCAGCCTCTGGTACTCGACCATTGTTTTCTTCAAGGGGGATGTTACATCAAGTCACTTGACGAAACCTGTGGTGATAATATGGTTGTTTGTGGTTCTCATCATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACTGTTCAAGTGCTCAAACCAACCGTAACTGATATCAATCAGGTTCTTAAAAATGGAGAGAACGTTGGGTATCAGGGAGGATCTTTTGTGTATGAAATTCTCAAATCGTTGAAGTTTGATGATTCTCGACTCAAAACTTACGAGTCTGCTGAAGAAATGCAAGAACTTTTCATCAAAGGAAGCATCAATGGCGGAATTTCTGCAGCAGTGGATGAAACCCCTTACATTAAAATATTTCTCGCTAAGTACTGCTCACAATACACCACCACCGTCGAACCCACTTATAAAGCGGATGGCTTTGGTTTTGGTTTTCCATTGGGGTCGCCCTTAGTACCTGATATCTCGAGAGCGATTTTGAAGGTGACGGAGGGCGATAGAATAAGAGAGATTGAAAATGCATGGTTCAAAAAGGTGCAAGAATGTTCGGCGTCGGAAGCGACCGAGTTGTCTTCCACCCGCCTAGGTATCCAGAGTTTTTGGGTACTTTTTGTGGGCACCGTCATTGTTTCCATACTTGCTGTGCTCGTTTTCATTGTCAAGTTTTTCATGGATGAATGGTCGGTATGTTGGAACAACGATATTTCTATCCGGCAAAAAATTAGCAACTTGCGTGCCAGGTTCATGGATAGAGATGCGGAACTTGTAGTTGTGCGAGAAAATCGCCCCGGACAAGATTGA 2670 45.06 MRRRKGLIRIGFGVLVIVLFLNMLLMAATVTAQEEEEAVTVAATKGGESESEADFYSSRSRYKTRLILNTIDSNGTVVDAAAAALDLIKKEEVQAIIGPTSSMQASFMIDVGEKANVPIISFSATRPSLTTHRSPFFFRVAQEDSSQVKAIGDIVKAFKWRQVVPIYVDNEFGDGIIPYLVGALQEVDANVPYQSIISPTATDDHINVELLKLMTMQTRVFVVHMLPNLASRLFTIARKIGMMTRGYVWITTDAITNEFDSIEPFTLESMQGVLGIRTYTPGIKRLETFKRGWERRFLGYYPTIEEIPKLNVFGLWAYDAAWALAIAVEKAGTDNLQYNKTNDVTTMKMNSSNYLYNLGVNRNGPKLRDAFSNVKFKGLAGEFSLTDGQLQSFVFEIVNVIGNDRRNVGFWSPETGLTKKLRGSSGLRPIIWPGDLENKAPKGWEIPTDGKKLRVGVPVKDGFYEFVNVVRDPKTNETEVSGYCIDVFKAVIEALPYAVAYEFIPNDKSNANPGGSYNDLTYQLFLGKFDAVVGDITIRGNRSDYIDYTLPFTESGVSMVVPMKSSKNTSPWAFLKPLTGKLWALVGGFFFFVAFVVWILEHRINTAFRGRAWDQICTSLWYSTIVFFKGDVTSSHLTKPVVIIWLFVVLIITQSYTASLASLLTVQVLKPTVTDINQVLKNGENVGYQGGSFVYEILKSLKFDDSRLKTYESAEEMQELFIKGSINGGISAAVDETPYIKIFLAKYCSQYTTTVEPTYKADGFGFGFPLGSPLVPDISRAILKVTEGDRIREIENAWFKKVQECSASEATELSSTRLGIQSFWVLFVGTVIVSILAVLVFIVKFFMDEWSVCWNNDISIRQKISNLRARFMDRDAELVVVRENRPGQD 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1992911 1999551 + Hsped.10g01960.1 Hepe10g0196 580743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0196 889 Gene3D - 145 312 - -
Hepe10g0196 889 CDD GluR_Plant 451 799 - -
Hepe10g0196 889 SMART GluR_14 452 801 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe10g0196 889 FunFam Glutamate receptor 571 699 - -
Hepe10g0196 889 Gene3D - 703 807 - -
Hepe10g0196 889 CDD PBP1_GABAb_receptor_plant 54 421 IPR044440 -
Hepe10g0196 889 Gene3D - 454 571 - -
Hepe10g0196 889 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 55 851 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Hepe10g0196 889 SUPERFAMILY Periplasmic binding protein-like I 65 434 IPR028082 -
Hepe10g0196 889 FunFam Glutamate receptor 2.7 706 807 - -
Hepe10g0196 889 Gene3D - 341 453 - -
Hepe10g0196 889 FunFam Glutamate receptor 143 304 - -
Hepe10g0196 889 FunFam Glutamate receptor 452 570 - -
Hepe10g0196 889 Pfam Receptor family ligand binding region 54 402 IPR001828 -
Hepe10g0196 889 SUPERFAMILY Periplasmic binding protein-like II 440 800 - -
Hepe10g0196 889 Gene3D - 572 702 - -
Hepe10g0196 889 Pfam Ligand-gated ion channel 581 831 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe10g0196 889 PIRSF IGluLR_plant 14 888 IPR017103 -
Hepe10g0196 889 PRINTS Metabotropic glutamate GPCR signature 808 829 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Hepe10g0196 889 PRINTS Metabotropic glutamate GPCR signature 147 163 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Hepe10g0196 889 PRINTS Metabotropic glutamate GPCR signature 96 122 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Hepe10g0196 889 PRINTS Metabotropic glutamate GPCR signature 128 147 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Hepe10g0196 889 Pfam Ligated ion channel L-glutamate- and glycine-binding site 473 562 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0196 Hepe-Chr10:1992911 Hepe10g0198 Hepe-Chr10:2016978 0.0 dispersed
Hepe10g0196 Hepe-Chr10:1992911 Hepe10g0197 Hepe-Chr10:2000129 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0196 K05387 - csv:101203550 1251.88