Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0197 ATGTTACGCATGGCCGCGACCGTGACGGCGCAGGAGGAGGAGGAGGCGGTGACGGTGGCGGCGACTACGGCGGAGAAAGTGAAAGTGAAGGTGGGTGTGGTTTTGGATTTGAATGTTGTGGTTGGGAAGATGGGTCTAAGTTGTATTTCAATGGCTCTAGCTGATTTCTATTCTTCTCGGAGTCATTACAAAACCAGACTCATTCTCAACACCATTGACTCTAATGGCACTGTTGTTGATGCAGCTGCTGCAGCTCTAGATTTGATAAAGAAAGATGAAGTGCAAGCCATAATAGGCCCAACAAGCTCCATGCAAGCCAACTTCATGATCGATGTTGGAGAGAAAACACAAGTTCCCATCATCTCATATTCAGCCACACGACCTTCCCTCACATCCCACCGCAGCTCTTTCTTCTTTCGAGTCGCCCAGAACGATTCCTCTCAGGTGAAAGCAATCGGAGCCGTCGTGAAAGCCTTCAAATGGCGGCAGGTCGTCCCGATCTACAGCGACAACGAGTTCGGCGATGGCATCATCCCTTACCTCATCGATGCTCTACAAGAAGTTGACGCGGACGTGCCTTACCAGAGCATCATCTCCCCCGCCGCCACCGACGCGCAAATTACGAGCGAGCTTCACAAGTTGATGAAGATGCCGACCAGAGTGTTTGTGGTGCACATGTTAACTCGTCATGCTTCAAGATTCTTCACAAAGGCTAACGAGATTGGAATGATGAAACGGGGCTATGTTTGGATAATCACAGATGCTATAGCAAATGAATTGGATTTAATAGAACCTTCCGCTTTCGAGGCGATGCAAGGAGTTGTTGGAATAAGAACTTACGTCCCGAGAACCAAAAAGCTCGACTCCTTCAAACACGATTGGTCGAACAGATTTCAAAGGTATTATCCAAACATAGAACACATTCCAGAGCTGGATGTATTTGGGTTATGGGCTTACGACGCCGCTTGGGCGTTGGCCATGGCCGTGGAAAAGGCCGGTACCGACAACCTTCGATACAACCCGACCAATGTTACCGCCACGAAAGTGAACTCATCAAACTATCTATTCAGCCTTGGGGTGAATGAAAATGGAATGAAGTTGCGAGATGCCTTCTCAAATGTGACGTTTAGGGGGTTGGCAGGTGAGTTCAGTCTGATCAATGGACAGTTACAACCATCCCTTTTCGAGATAGTGAATCTAGTCGGCAATGGTAGAAGAAACGTCGGATTTTGGTCACCGGAAACTGGGCTAACGAGGAAGCTGCAGGACTCAGAAAGAGCCAAAGGGTTGAGATCGATTATCTGGCCGGGAGAGCCGATTCATAATCCAAAAGGGTGGCAAATTCCAATCATAGGGAAGAAGTTGAAAGTTGGGGTTCCAGTGAAGGATGGATTTTGGGAGTTTGTGAGAGTGGTTCGAGATTATGAAACAAATGCAACAATAGTAAAAGGATATTGTATAGATGTGTTCAAGGCTGTGATTGAAGCATTGCCTTATAAGGTTGATTATGAGTTCATTCCTGCCGAAAGATCCACTGCAGCCCCGGGTGGCAGCTATAATGAATTGACTTATCAACTCTTCCTTGGGAAGTTTGATGCGGTGGTGGGTGACATAACGATCCGAGCAAACAGGTCAATATACATAGATTACACATTGCCGTTCACAGAATCAGGAGTGTCAATGGTTGTTCCAATGAAGAACATGAAGAAGACAAACGCATGGGTGTTCCTAAAGCCTCTTACATGGAAGTTGTGGTTGATCACAGGTTTCTTCTTCATCTTCATTGCACTAGTTGTTTGGATCCTCGAACATAGAGTTAATGAAGACTTCCGTGGACATCCTTTGGATCAGATTTGTACCAGTCTCTGGTACTCTTTCTCCACCATGGTATTCGCCCATAGGGAGGTTACATTGAACAATTGGACGAGACTTGTGGTGATAATATGGCTATTTGTGGTTCTCATCCTTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACTGTTCAAGAACTCGAACCAACTGTAACTGATATCAACCAGCTTCTTAAAAATGGAGAAAACATTGGGTATCAGGGAGGATCTTTTGTGTATGGAATTCTCAAATCGTTGAAGTTTGGTGATTCCCAACTCAAAACCTACGAGTCTGCAGAAGAAATGCATCAACTTTTCATCAAAGGAAGCATCAATGGCGGCATTTCTGCTGCACTGGATGAAACCCCTTACATTAAACTATTTCTTTCTAAGTACTGCTCACAATACACCACCGCCGAACCCACCTATAAAGCTGATGGCTTTGCTTTTGGTTTTCCAATAGGTTCGCCTTTAGTACCGGATATCTCCAGAAAGATCTTGGAGGTGACGGAAAGCGATAAAATGAGCGAGATCGAAAACACATGGTTCAAAAATGTGAACGAATGTTCGACTTCAAAAGTGGCCGAGTTGTCTTCAACCCGCTTGAGCATCAACAGCTTCTGGGGACTTTTCCTGATCACCGGCGTCGTTTCCCTATCTTCTGTGGTTTTTTATATCACCAAATTTGTGTATGACGAACAACCGCGGTGGCGGAATAACGTAGAAGCTCCGATCTGGCATAGATTCATGGAGTTGGTCAGGGAGTTCATGAAGAGAGATTCGAGAGCTCACCCGTTGAGGCGAAGGGTATTCATAAATGGCGTTCCTGTTAATCCAGAAGCTGTAGTTGTTAGAGATGATGATCATCCTCGAAGAGATTAA 2739 45.56 MLRMAATVTAQEEEEAVTVAATTAEKVKVKVGVVLDLNVVVGKMGLSCISMALADFYSSRSHYKTRLILNTIDSNGTVVDAAAAALDLIKKDEVQAIIGPTSSMQANFMIDVGEKTQVPIISYSATRPSLTSHRSSFFFRVAQNDSSQVKAIGAVVKAFKWRQVVPIYSDNEFGDGIIPYLIDALQEVDADVPYQSIISPAATDAQITSELHKLMKMPTRVFVVHMLTRHASRFFTKANEIGMMKRGYVWIITDAIANELDLIEPSAFEAMQGVVGIRTYVPRTKKLDSFKHDWSNRFQRYYPNIEHIPELDVFGLWAYDAAWALAMAVEKAGTDNLRYNPTNVTATKVNSSNYLFSLGVNENGMKLRDAFSNVTFRGLAGEFSLINGQLQPSLFEIVNLVGNGRRNVGFWSPETGLTRKLQDSERAKGLRSIIWPGEPIHNPKGWQIPIIGKKLKVGVPVKDGFWEFVRVVRDYETNATIVKGYCIDVFKAVIEALPYKVDYEFIPAERSTAAPGGSYNELTYQLFLGKFDAVVGDITIRANRSIYIDYTLPFTESGVSMVVPMKNMKKTNAWVFLKPLTWKLWLITGFFFIFIALVVWILEHRVNEDFRGHPLDQICTSLWYSFSTMVFAHREVTLNNWTRLVVIIWLFVVLILTQSYTASLASLLTVQELEPTVTDINQLLKNGENIGYQGGSFVYGILKSLKFGDSQLKTYESAEEMHQLFIKGSINGGISAALDETPYIKLFLSKYCSQYTTAEPTYKADGFAFGFPIGSPLVPDISRKILEVTESDKMSEIENTWFKNVNECSTSKVAELSSTRLSINSFWGLFLITGVVSLSSVVFYITKFVYDEQPRWRNNVEAPIWHRFMELVREFMKRDSRAHPLRRRVFINGVPVNPEAVVVRDDDHPRRD 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2000129 2013985 - Hsped.10g01970.1 Hepe10g0197 580744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0197 912 Gene3D - 749 810 - -
Hepe10g0197 912 CDD GluR_Plant 453 802 - -
Hepe10g0197 912 Gene3D - 151 313 - -
Hepe10g0197 912 FunFam Glutamate receptor 150 308 - -
Hepe10g0197 912 Pfam Ligand-gated ion channel 581 835 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe10g0197 912 Pfam Ligated ion channel L-glutamate- and glycine-binding site 474 564 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe10g0197 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 876 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Hepe10g0197 912 FunFam Glutamate receptor 454 573 - -
Hepe10g0197 912 Gene3D - 349 455 - -
Hepe10g0197 912 FunFam Glutamate receptor 573 703 - -
Hepe10g0197 912 SUPERFAMILY Periplasmic binding protein-like I 28 437 IPR028082 -
Hepe10g0197 912 Gene3D - 573 701 - -
Hepe10g0197 912 Gene3D - 456 572 - -
Hepe10g0197 912 CDD PBP1_GABAb_receptor_plant 35 421 IPR044440 -
Hepe10g0197 912 SMART GluR_14 454 804 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe10g0197 912 Gene3D - 50 150 - -
Hepe10g0197 912 FunFam Glutamate receptor 2.7 710 810 - -
Hepe10g0197 912 PIRSF IGluLR_plant 2 902 IPR017103 -
Hepe10g0197 912 Pfam Receptor family ligand binding region 48 402 IPR001828 -
Hepe10g0197 912 SUPERFAMILY Periplasmic binding protein-like II 431 803 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0197 K05387 - - csv:101203794 1343.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1459 Hepe-Chr8:17686919 Hepe10g0197 Hepe-Chr10:2000129 6.11e-314 dispersed
Hepe09g0515 Hepe-Chr9:4827481 Hepe10g0197 Hepe-Chr10:2000129 5.57e-228 dispersed
Hepe10g0196 Hepe-Chr10:1992911 Hepe10g0197 Hepe-Chr10:2000129 0.0 tandem
Hepe10g0197 Hepe-Chr10:2000129 Hepe10g0198 Hepe-Chr10:2016978 0.0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g631 . . . . . . . . . Cmo12g00332 . . . . . Cpe07g00336 . Bhi04g00081 Tan02g2792 . . Hepe10g0197 . Lcy13g1866 . . . . . . . . . . . . . . Cme03g01551 . . Bda01g01359 . . . . . . . . . Cma12g00380 . . . . . . . . . . . . . . . . . . . . Chy03g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202