Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0202 ATGGCTTCCAAGCTTTGTGATTCCTGCAAGTCCGCGACGGCGACTTTGTTTTGCCGAGCTGACTCCGCCTTCCTTTGCCTTGCCTGTGACTCCAAAGTTCACGCAGCCAACAAACTCGCTTCTCGCCATGCTCGCGTTTGGCTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGTATAACTTGCGACCACGATATCCACTCTGCGAATCCCCTCGCTCGCCGTCACGACCGAGTTCCGGTCACTCCGTTTTACGACTCTTCCAACACGGAGAACTCCCTCCCTCTTAAACCTGGCGCTGCTATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGGTGATGCTGCCGATGTTAGCAGAGAAGAGGCTGAGGCTGCTTCCTGGCTTCTCCCTAACCCTAACCCTAAGGCAATCGACAGTTCAGATCTGAACTCCGGGAAGTTTGAGTTTCCGGAAATGTATCCTTACCTAGATCTGGATTACAGCCATGTGGATCCGAAATTGGAAGCGCAAGAGCAGAATAGCTCCGGCGCCGATGGAGTTGTTCCTGATCAGAGCAAAGGCGTTCATCTCTCGCCGGTGAATGATCGCTGCTTCGGCATCGACTTCCCCGGCGCTAAATCGTTCCCGTACGGTTACAACCCTCAGTCAGTCAGTCACAGTGTAAGTCAAACTCATTATCGCATCTCTAAAAATCATAAATCCAGTAGCTAG 750 53.2 MASKLCDSCKSATATLFCRADSAFLCLACDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCITCDHDIHSANPLARRHDRVPVTPFYDSSNTENSLPLKPGAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIDSSDLNSGKFEFPEMYPYLDLDYSHVDPKLEAQEQNSSGADGVVPDQSKGVHLSPVNDRCFGIDFPGAKSFPYGYNPQSVSHSVSQTHYRISKNHKSSS 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2065897 2067412 + Hsped.10g02020.1 Hepe10g0202 580749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0202 249 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Hepe10g0202 249 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Hepe10g0202 249 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270(InterPro)
Hepe10g0202 249 CDD Bbox1_BBX-like 48 91 IPR049808 -
Hepe10g0202 249 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Hepe10g0202 249 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 236 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Hepe10g0202 249 CDD Bbox1_BBX-like 5 48 IPR049808 -
Hepe10g0202 249 MobiDBLite consensus disorder prediction 230 249 - -
Hepe10g0202 249 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Hepe10g0202 249 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0202 Hepe-Chr10:2065897 Hepe09g0511 Hepe-Chr9:4751592 1.79e-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56434 PF00643 zf-B_box 3.70E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0202 - - - 0.0