Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0202 | ATGGCTTCCAAGCTTTGTGATTCCTGCAAGTCCGCGACGGCGACTTTGTTTTGCCGAGCTGACTCCGCCTTCCTTTGCCTTGCCTGTGACTCCAAAGTTCACGCAGCCAACAAACTCGCTTCTCGCCATGCTCGCGTTTGGCTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGTATAACTTGCGACCACGATATCCACTCTGCGAATCCCCTCGCTCGCCGTCACGACCGAGTTCCGGTCACTCCGTTTTACGACTCTTCCAACACGGAGAACTCCCTCCCTCTTAAACCTGGCGCTGCTATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGGTGATGCTGCCGATGTTAGCAGAGAAGAGGCTGAGGCTGCTTCCTGGCTTCTCCCTAACCCTAACCCTAAGGCAATCGACAGTTCAGATCTGAACTCCGGGAAGTTTGAGTTTCCGGAAATGTATCCTTACCTAGATCTGGATTACAGCCATGTGGATCCGAAATTGGAAGCGCAAGAGCAGAATAGCTCCGGCGCCGATGGAGTTGTTCCTGATCAGAGCAAAGGCGTTCATCTCTCGCCGGTGAATGATCGCTGCTTCGGCATCGACTTCCCCGGCGCTAAATCGTTCCCGTACGGTTACAACCCTCAGTCAGTCAGTCACAGTGTAAGTCAAACTCATTATCGCATCTCTAAAAATCATAAATCCAGTAGCTAG | 750 | 53.2 | MASKLCDSCKSATATLFCRADSAFLCLACDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCITCDHDIHSANPLARRHDRVPVTPFYDSSNTENSLPLKPGAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIDSSDLNSGKFEFPEMYPYLDLDYSHVDPKLEAQEQNSSGADGVVPDQSKGVHLSPVNDRCFGIDFPGAKSFPYGYNPQSVSHSVSQTHYRISKNHKSSS | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2065897 | 2067412 | + | Hsped.10g02020.1 | Hepe10g0202 | 580749 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0202 | 249 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 48 | IPR000315 | GO:0008270(InterPro) | |
Hepe10g0202 | 249 | Pfam | B-box zinc finger | 46 | 91 | IPR000315 | GO:0008270(InterPro) | |
Hepe10g0202 | 249 | Pfam | B-box zinc finger | 4 | 43 | IPR000315 | GO:0008270(InterPro) | |
Hepe10g0202 | 249 | CDD | Bbox1_BBX-like | 48 | 91 | IPR049808 | - | |
Hepe10g0202 | 249 | ProSiteProfiles | Zinc finger B-box type profile. | 44 | 91 | IPR000315 | GO:0008270(InterPro) | |
Hepe10g0202 | 249 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 4 | 236 | IPR045281 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER) | |
Hepe10g0202 | 249 | CDD | Bbox1_BBX-like | 5 | 48 | IPR049808 | - | |
Hepe10g0202 | 249 | MobiDBLite | consensus disorder prediction | 230 | 249 | - | - | |
Hepe10g0202 | 249 | SMART | bboxneu5 | 49 | 91 | IPR000315 | GO:0008270(InterPro) | |
Hepe10g0202 | 249 | SMART | bboxneu5 | 1 | 48 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe10g0202 | Hepe-Chr10:2065897 | Hepe09g0511 | Hepe-Chr9:4751592 | 1.79e-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56434 | PF00643 | zf-B_box | 3.70E-06 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0202 | - | - | - | 0.0 |