Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0207 ATGGCAAGCGACGAAGAGAGAGTTCTTGAGCACCAGCTGGAGTTTCAATTGCACGAGCAGAAAGATTCTCTCGCCGCCTTACAAGATGCCCTAGCCTCCGACGCCTCCAATCCGGAGCTTCTCGCGGTTCACGAGGAGCTTATCCAGGTAATTAAAGATGCCGAGGAAGGGCTTCTTCACCTCAAGCGTGCTAGGTTATTACGAGAAGCAGATTTGGCGTTGCGTGGTTGTGATAGTAACGCGGCAGAGCCTCTTGATCCTACGGATGTCGAACCTGAACCTCTAGAGGATCGGAGTTTCATCGTTGGATCGAAATGTAGATTCCGGCACACTGATGGACGTTGGTATGATGGTGAAATTGTTGGATTGGATGCTTCTAATTCTGCGAAAGTTTCTTTCCTCACTCCTACAACTGATAATATGTTGATATGCAAGTTCTTCTTACAGCAAAGATGTCGGTTTGGCACTAACTGCCGCTTATCGCATGGAATGAATATCCCTCTGACCTCCCTTAGGAGATACGTGCCAACAATTTGGAATCAGTCACTAGCAGGGTCCAGTATCTGGGCTCTCTCCTCTAGGAATGGCATTTGGAGACATGCTGAACTTGAATCTTGGGATGATGCACTTCAAGCTGCACAAGTTGTTTTTAAAGATGATGGATCCTCTCAAAATCTTGGACCAGAGGACATTGCATTATCTGAGTATGCTCAAATTAGTGATGGAGAAGAAAGTGATTCCAGCCTCGAACAGTCCGACTCAAGTGATTATGAAGAGGACGATGTGCAGGGTTTGGGATTTCTAGAAAGCTCTACCCAGCAGAGAGGCATCCAGACAGAGACCACCATATTTGCTAAATGGGAAAACCATACCCGGGGAATCGCTTCCAAGATGATGGCTAATATGGGCTATCGTGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTATCCCTGTCAAAGTTCTCCCAGCAAAGCAATCTCTTGATCATGCTCTAGAGTCACAAAAAGAGATTACTACTAATGACGAGAATAATGGTAAGAAACGAAGTAGAGGCGGTAAGAGGAAACGTGAGAAAAAGTTTGCTGCAGCAACCCGGGCAGCTAAAGTTAAAGAAGAGCCAAGACCTGATGTCTTTAATCTTATCAACAATCACCTTGCAATACATAATGGAGCATTGAATGATGGATCTGTGAAGAAACAGAAAGATAAAGGTTCAGCAGATGGGAAGAAGGTAGATAGACGAGCCCTAATCGCGTACGATGATGAGATGAAAGACCTGCGAATACGAATAGAGAAGCTTGAAGAAATGGTGAACAGAAATAAGAAAGAGAAGGTTGTTTACGAGGCTGCCTTAAGAAAGCTGAACGAGACCCGAAAAGCTCTGGCCGAGGCCGAGGCAGCTCATGCGTCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAGATGGTTGAAGTTTTAG 1479 45.57 MASDEERVLEHQLEFQLHEQKDSLAALQDALASDASNPELLAVHEELIQVIKDAEEGLLHLKRARLLREADLALRGCDSNAAEPLDPTDVEPEPLEDRSFIVGSKCRFRHTDGRWYDGEIVGLDASNSAKVSFLTPTTDNMLICKFFLQQRCRFGTNCRLSHGMNIPLTSLRRYVPTIWNQSLAGSSIWALSSRNGIWRHAELESWDDALQAAQVVFKDDGSSQNLGPEDIALSEYAQISDGEESDSSLEQSDSSDYEEDDVQGLGFLESSTQQRGIQTETTIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKEITTNDENNGKKRSRGGKRKREKKFAAATRAAKVKEEPRPDVFNLINNHLAIHNGALNDGSVKKQKDKGSADGKKVDRRALIAYDDEMKDLRIRIEKLEEMVNRNKKEKVVYEAALRKLNETRKALAEAEAAHASASNAVTSREKEKRWLKF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2102385 2105886 - Hsped.10g02070.1 Hepe10g0207 580754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0207 492 MobiDBLite consensus disorder prediction 240 261 - -
Hepe10g0207 492 MobiDBLite consensus disorder prediction 246 261 - -
Hepe10g0207 492 Pfam G-patch domain 291 333 IPR000467 GO:0003676(InterPro)
Hepe10g0207 492 SUPERFAMILY CCCH zinc finger 140 163 IPR036855 GO:0046872(InterPro)
Hepe10g0207 492 Coils Coil 421 479 - -
Hepe10g0207 492 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 492 - -
Hepe10g0207 492 MobiDBLite consensus disorder prediction 467 492 - -
Hepe10g0207 492 Gene3D - 101 175 - -
Hepe10g0207 492 MobiDBLite consensus disorder prediction 338 353 - -
Hepe10g0207 492 ProSiteProfiles Zinc finger C3H1-type profile. 138 165 IPR000571 GO:0046872(InterPro)
Hepe10g0207 492 Pfam CCCH-type zinc finger 143 162 IPR041367 -
Hepe10g0207 492 SMART c3hfinal6 138 164 IPR000571 GO:0046872(InterPro)
Hepe10g0207 492 ProSiteProfiles G-patch domain profile. 291 337 IPR000467 GO:0003676(InterPro)
Hepe10g0207 492 SMART G-patch_5 289 335 IPR000467 GO:0003676(InterPro)
Hepe10g0207 492 MobiDBLite consensus disorder prediction 338 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0207 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0207 Hepe-Chr10:2102385 Hepe09g0612 Hepe-Chr9:5729033 2.53e-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g608 . Blo12g01042 . Bda03g00112 . . Bma04g00104 . Cmo05g00345 Cmo12g00324 . . . Car12g00354 Sed03g1654 Cpe07g00329 . Bhi04g00065 Tan02g2778 Cmetu03g2063 . Hepe10g0207 . Lcy13g1843 . . . . . . . . . . Cone20ag0311 . . . Cme03g01563 . . . . . . . . . . . . Cma12g00371 . Car05g00287 Cpe11g00287 . . . . . . . . Cla08g01377 Cam08g1847 Cec08g1425 Cco08g1558 Clacu08g1542 . Cre08g1325 Lsi08g01259 . Chy03g01073 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010406 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56435 PF01585 G-patch 8.80E-13 CL0449 Hepe TF