Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0221 ATGGCCAAGTGTCATTCCAACACCGTCGGATCACTGGCAATCGACGGCGTCAATGAAGCTACTCGAAATTTCCGATTCTGTACGGCGTTTTCCGGAGCTGCATTCCGCCGGAGAATCTACGACGCGGTTAGTTGCGGTGGGAGTTCTCGGTACCGCCACCGGTACAAGGATGAGACGATGGATGATGACGCGGGGACAGGGAACGGATCGGTTTCGGATTCTAGGGATTTGAAGGAGGAGAAGGAGCCGAGGAGTCATAAACTGGCGAATGGAAGATCGGAGAAGCTTGTGGATCTTCTGAATATGGCGGAATCGGTGGAGCCGGAGAATGAGGCGGAGACGAGGAAGAAGGAGGACGCCTTGGAGGAATTGAAATGCACGGTGAAGGATTTGCAGGTTGAGGATTTGGCGAGGCGGAAATCGGCGGCGAGTAATGTGAGGCTTCTGGCGAAGGAGGATTTGGTTATACGAGGGACGCTTGCTCTTCTCGGAGCCATTCCTCCTCTCGTTGCAATGCTTGATTTGGAAGATGAACAGTCTCAGATCGCTGCGCTCTACGCATTGCTAAACCTTGGAATCGGCAACAATGCGAACAAGGCAGCAATTGTGAAAGTGGGGATCATCCACAAGATGCTAACCCTCATTAAATCAGAGAGTGCCTCAAATTCATCAGTTACAGAAGCCATAATTGCCAACTTCCTCGGCTTGAGCGCACTGGACTCGAACAAGCCTGTAATTGGATCGTCCGGAGCGATTCCATTCTTAGTCAAATCCCTACAAAACACAGACCGTAAAATCAGCAATCAGGCCCGTCAGGATGCGTTAAGGGCACTCTTCAATCTCTCAATCACGGCATCAAATATCTCGATGATATTAGAAACAGATTTAATCCCATTTCTTCTTAACATGTTGGGAGATATGGAAGTGAGTGAAAGGATCCTTTCGATTTTAAGCAATGTGGTATCAACCCCAGAAGGCAGAAGAGCAATAAGCATAGTTCCAGATGCATTCCCAATACTAGTTGATGTTCTAAACTGGACAGATTCATCTGGGTGTCAAGAAAAGGCGTCCTACGTTTTAATGGTGATGGCACACAAGCTATATGGTGAAAGACAGACCATGGTAGAAGCTGGGCTTGTTTCTTCTTCTCTTGAATTAACGCTATTGGGTAGCGCATTGGCTCAGAAGAGAGCATCCAGAATTTTGGAGTGTTTGAGATATGATAAAGGGAAGCAAGTTTCTGAAAGCTTTGGTGGGAATGTAGGTGCAGCAATGTCTGCTCCCATTATTGGTGGAACTTCCTCTTCTTCCAAAATGTGTGTGGAAGAGTGTGAAGAAGCGATGAGCGTCGAGAAGAAAGCGGTGAAGCAATTAGTCCAACAGAGTTTGCAGCACAACATGAGGAAAATTGTGAAGAGGGCTAATTTGCATCAAGATTTTGTTCCTTCAGAGCATTTTAAGTCGCTTACAGCAAGTTCAACTTCCAAAAGCTTACCATTTTAA 1503 46.84 MAKCHSNTVGSLAIDGVNEATRNFRFCTAFSGAAFRRRIYDAVSCGGSSRYRHRYKDETMDDDAGTGNGSVSDSRDLKEEKEPRSHKLANGRSEKLVDLLNMAESVEPENEAETRKKEDALEELKCTVKDLQVEDLARRKSAASNVRLLAKEDLVIRGTLALLGAIPPLVAMLDLEDEQSQIAALYALLNLGIGNNANKAAIVKVGIIHKMLTLIKSESASNSSVTEAIIANFLGLSALDSNKPVIGSSGAIPFLVKSLQNTDRKISNQARQDALRALFNLSITASNISMILETDLIPFLLNMLGDMEVSERILSILSNVVSTPEGRRAISIVPDAFPILVDVLNWTDSSGCQEKASYVLMVMAHKLYGERQTMVEAGLVSSSLELTLLGSALAQKRASRILECLRYDKGKQVSESFGGNVGAAMSAPIIGGTSSSSKMCVEECEEAMSVEKKAVKQLVQQSLQHNMRKIVKRANLHQDFVPSEHFKSLTASSTSKSLPF 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2321033 2324136 - Hsped.10g02210.1 Hepe10g0221 580768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0221 500 MobiDBLite consensus disorder prediction 56 90 - -
Hepe10g0221 500 Gene3D - 108 266 IPR011989 -
Hepe10g0221 500 SMART arm_5 239 283 IPR000225 GO:0005515(InterPro)
Hepe10g0221 500 SMART arm_5 284 322 IPR000225 GO:0005515(InterPro)
Hepe10g0221 500 SMART arm_5 152 193 IPR000225 GO:0005515(InterPro)
Hepe10g0221 500 SMART arm_5 195 238 IPR000225 GO:0005515(InterPro)
Hepe10g0221 500 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 20 500 - -
Hepe10g0221 500 Coils Coil 441 461 - -
Hepe10g0221 500 Gene3D - 267 418 IPR011989 -
Hepe10g0221 500 MobiDBLite consensus disorder prediction 73 90 - -
Hepe10g0221 500 Coils Coil 114 134 - -
Hepe10g0221 500 SUPERFAMILY ARM repeat 128 405 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0221 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1975 Hepe-Chr1:84553141 Hepe10g0221 Hepe-Chr10:2321033 2.23e-189 dispersed
Hepe04g1912 Hepe-Chr4:74028613 Hepe10g0221 Hepe-Chr10:2321033 4.49e-30 dispersed
Hepe07g1875 Hepe-Chr7:62260242 Hepe10g0221 Hepe-Chr10:2321033 1.21e-18 dispersed
Hepe01g1973 Hepe-Chr1:84538524 Hepe10g0221 Hepe-Chr10:2321033 1.95e-188 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g514 . . Bda01g00768 . . . . . . . . . . . Sed11g1146 . . Bhi04g00043 Tan02g2758 Cmetu03g1431 . Hepe10g0221 . Lcy13g1826 . . . . . . . . . . . . . . . . . . Bda13g01245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00112
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001538 3 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 3 2 1 2 2 3 2 1 71