Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0226 ATGGCCAGACCTCAACAGCGATATCGAGGCGTTCGTCAAAGGCATTGGGGCTCTTGGGTTTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTGGGAACTTTCGAAACGGCTGAAGATGCGGCAAGAGCCTACGATGAAGCCGCTCGGCTAATGTGCGGCCCGAGAGCAAGAACCAATTTCCCTTTCAACGCAAACGACTCCAATAATTCCTCTTCTTCTAAACTTCTCTCTGCGAATTTGACTGCAAAGCTCCACCGTTGCTACATGGCGTCTCTCCATTTGACGAACCCTTCTCTGCAGAAACCCGCCGCCCATCGCTTCAACTCCGGCGCCGATACGGCGGAGAAAAAAAGAGTGACGGCGGCGGCGGCGGCGAAAAAGGCTCAAACGGAAACCGCCCATCAGCCGTTTGAGGCTCTGGAAGAAGATCATATTGAACAGATGATTGAAGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTGTTGTGCCACCGTCTCAGGCGTTTTGA 522 51.15 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNANDSNNSSSSKLLSANLTAKLHRCYMASLHLTNPSLQKPAAHRFNSGADTAEKKRVTAAAAAKKAQTETAHQPFEALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2400040 2400718 - Hsped.10g02260.1 Hepe10g0226 580773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0226 173 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0226 173 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 122 IPR050913 -
Hepe10g0226 173 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0226 173 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Hepe10g0226 173 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Hepe10g0226 173 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0226 173 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0226 173 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0226 173 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0226 173 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1370 Hepe-Chr2:17426347 Hepe10g0226 Hepe-Chr10:2400040 9.18e-31 dispersed
Hepe08g2535 Hepe-Chr8:66945677 Hepe10g0226 Hepe-Chr10:2400040 1.65e-31 dispersed
Hepe09g0678 Hepe-Chr9:6424384 Hepe10g0226 Hepe-Chr10:2400040 1.23e-29 dispersed
Hepe10g0226 Hepe-Chr10:2400040 Hepe10g0515 Hepe-Chr10:5945996 1.75e-20 dispersed
Hepe10g0226 Hepe-Chr10:2400040 Hepe10g0227 Hepe-Chr10:2410480 7.12e-65 tandem
Hepe01g1984 Hepe-Chr1:84647565 Hepe10g0226 Hepe-Chr10:2400040 1.40e-61 wgd
Hepe10g0226 Hepe-Chr10:2400040 Hepe03g1656 Hepe-Chr3:73419690 1.74e-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56437 PF00847 AP2 6.70E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0226 - - - 0.0