Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0227 ATGCCTAGACCACAACAAAGATATCGCGGCGTCCGACAGCGCCATTGGGGTTCTTGGGTCTCCGAAATCCGCCATCCTCTATTGAAGACTAGAATTTGGTTGGGCACATTCGAGACGGCGGAAGATGCGGCACGGGCATACGACGAAGCCGCGCGACTTATGTGCGGACCGAGAGCACGAACCAACTTCCCTTACGATGTCTCTCTATCTCGCTCATCGTCCTCCCGCCTTCTCTCCGCCACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCGTTGCAGCTGACCAAACAATCCTCCTCTGCAGCACGTCGCCCTCAAACCGACCCAACTCGAACCGATTTCGTCGTGGCATCCGGCATTGCCCTGACCGAGCGAGTAGAAGCGGATGCGACCGCGAAGAAAGTCAAAGTGGAGAGCGAGGATTGCGGGGAGCCGTTGATGATTGAGATGGTGGATGATGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGCGGAATTGAACTCCGTTCCGCCTCAGGACATTGA 540 55.0 MPRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDVSLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDPTRTDFVVASGIALTERVEADATAKKVKVESEDCGEPLMIEMVDDDHIQQMIEELLDYGGIELRSASGH 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2410480 2411344 - Hsped.10g02270.1 Hepe10g0227 580774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0227 179 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0227 179 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0227 179 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0227 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 123 IPR050913 -
Hepe10g0227 179 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0227 179 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0227 179 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0227 179 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Hepe10g0227 179 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Hepe10g0227 179 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1984 Hepe-Chr1:84647565 Hepe10g0227 Hepe-Chr10:2410480 4.57e-59 dispersed
Hepe02g1311 Hepe-Chr2:16630495 Hepe10g0227 Hepe-Chr10:2410480 5.99e-50 dispersed
Hepe03g1656 Hepe-Chr3:73419690 Hepe10g0227 Hepe-Chr10:2410480 2.51e-53 dispersed
Hepe10g0227 Hepe-Chr10:2410480 Hepe10g0515 Hepe-Chr10:5945996 2.08e-20 dispersed
Hepe10g0226 Hepe-Chr10:2400040 Hepe10g0227 Hepe-Chr10:2410480 7.12e-65 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56438 PF00847 AP2 7.20E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0227 - - - 0.0