Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0232 ATGGCTTTCCGAAACCAGCTCTCTCGGGACCTTCCTCTCCATTATGCGAATCAGTCCCAACAGCAGCAACCGGAACGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTCTCTGACCACTCTCCGGCTGGCGATGGTTCTAAGTCGGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCATCATTCTCACTACTCTGGTGAGACCACGACCACTGCTGCGGATAACGTCAACACCGACTTTCTCAATCTTCACACCACTGCTTCCAATTCCGCCGTCTCTCACGCGTCCGGTCAATGGCTCTCCCGTCCGATCCTCCATCGGAATCATAGTGATGTTATTGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGCGCCACCGCCACTTTGTCGCGCGAATCGGATGATTTGAAGAACAACAGCAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTCTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGTTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTGGATCAGTTGCCGAGAATAGATTCTCAGCTTGGTCAGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGACACATAGCCGGCAATGGAAAAGAGCTCGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCTCCAGGTGAAGGTACAGGTGCTACAATGTCTGATGATGACGACGACCAGATAGATAGTGATGCTAATATGTTTGATGGAAGTTTGGAGGGTCATGATGTTATGGGATTTGGTCCCCTTATCCCAACAGAGACTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGTAAAAGGAGAGCAGGTAAACTTCCTGGTGACACTACTTCAGTCTTGAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACACCAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGTAATGCAGGTGAAACAACAGGCAACGACCATCTTCCATAG 1368 48.17 MAFRNQLSRDLPLHYANQSQQQQPERPLSDNTLRSILSDQLSDHSPAGDGSKSEHPLQSTPNWLNSALLRNQTHHSHYSGETTTTAADNVNTDFLNLHTTASNSAVSHASGQWLSRPILHRNHSDVIDEVADAADAMIGATATLSRESDDLKNNSSDDVAVESDGNEGGAHGGEAAMNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLGQSQNVAAKYSSLGHIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDDDQIDSDANMFDGSLEGHDVMGFGPLIPTETERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKSNAGETTGNDHLP 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2468647 2473189 + Hsped.10g02320.1 Hepe10g0232 580779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0232 455 CDD homeodomain 369 430 IPR001356 GO:0003677(InterPro)
Hepe10g0232 455 MobiDBLite consensus disorder prediction 423 455 - -
Hepe10g0232 455 Pfam KNOX1 domain 185 224 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g0232 455 Gene3D - 367 428 - -
Hepe10g0232 455 FunFam homeobox protein knotted-1-like 3 isoform X1 367 428 - -
Hepe10g0232 455 ProSiteProfiles ELK domain profile. 346 366 IPR005539 GO:0003677(InterPro)
Hepe10g0232 455 Pfam ELK domain 346 367 IPR005539 GO:0003677(InterPro)
Hepe10g0232 455 SMART ELK_2 346 367 IPR005539 GO:0003677(InterPro)
Hepe10g0232 455 MobiDBLite consensus disorder prediction 11 60 - -
Hepe10g0232 455 SUPERFAMILY Homeodomain-like 368 432 IPR009057 -
Hepe10g0232 455 MobiDBLite consensus disorder prediction 147 174 - -
Hepe10g0232 455 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 180 428 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe10g0232 455 SMART KNOX1_2 182 226 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g0232 455 Pfam KNOX2 domain 239 288 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g0232 455 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe10g0232 455 SMART KNOX2_2 233 289 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g0232 455 MobiDBLite consensus disorder prediction 1 60 - -
Hepe10g0232 455 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677(InterPro)
Hepe10g0232 455 SMART HOX_1 368 433 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1595 Hepe-Chr6:66740123 Hepe10g0232 Hepe-Chr10:2468647 2.07e-124 dispersed
Hepe09g0208 Hepe-Chr9:1730709 Hepe10g0232 Hepe-Chr10:2468647 3.55e-29 dispersed
Hepe10g0232 Hepe-Chr10:2468647 Hepe10g1622 Hepe-Chr10:52932223 4.58e-29 dispersed
Hepe01g1989 Hepe-Chr1:84698643 Hepe10g0232 Hepe-Chr10:2468647 1.39e-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56439 PF03791 KNOX2 3.00E-19 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0232 - - - 0.0