Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0232 | ATGGCTTTCCGAAACCAGCTCTCTCGGGACCTTCCTCTCCATTATGCGAATCAGTCCCAACAGCAGCAACCGGAACGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTCTCTGACCACTCTCCGGCTGGCGATGGTTCTAAGTCGGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCATCATTCTCACTACTCTGGTGAGACCACGACCACTGCTGCGGATAACGTCAACACCGACTTTCTCAATCTTCACACCACTGCTTCCAATTCCGCCGTCTCTCACGCGTCCGGTCAATGGCTCTCCCGTCCGATCCTCCATCGGAATCATAGTGATGTTATTGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGCGCCACCGCCACTTTGTCGCGCGAATCGGATGATTTGAAGAACAACAGCAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTCTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGTTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTGGATCAGTTGCCGAGAATAGATTCTCAGCTTGGTCAGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGACACATAGCCGGCAATGGAAAAGAGCTCGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCTCCAGGTGAAGGTACAGGTGCTACAATGTCTGATGATGACGACGACCAGATAGATAGTGATGCTAATATGTTTGATGGAAGTTTGGAGGGTCATGATGTTATGGGATTTGGTCCCCTTATCCCAACAGAGACTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGTAAAAGGAGAGCAGGTAAACTTCCTGGTGACACTACTTCAGTCTTGAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACACCAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGTAATGCAGGTGAAACAACAGGCAACGACCATCTTCCATAG | 1368 | 48.17 | MAFRNQLSRDLPLHYANQSQQQQPERPLSDNTLRSILSDQLSDHSPAGDGSKSEHPLQSTPNWLNSALLRNQTHHSHYSGETTTTAADNVNTDFLNLHTTASNSAVSHASGQWLSRPILHRNHSDVIDEVADAADAMIGATATLSRESDDLKNNSSDDVAVESDGNEGGAHGGEAAMNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLGQSQNVAAKYSSLGHIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDDDQIDSDANMFDGSLEGHDVMGFGPLIPTETERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKSNAGETTGNDHLP | 455 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2468647 | 2473189 | + | Hsped.10g02320.1 | Hepe10g0232 | 580779 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0232 | 455 | CDD | homeodomain | 369 | 430 | IPR001356 | GO:0003677(InterPro) | |
Hepe10g0232 | 455 | MobiDBLite | consensus disorder prediction | 423 | 455 | - | - | |
Hepe10g0232 | 455 | Pfam | KNOX1 domain | 185 | 224 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe10g0232 | 455 | Gene3D | - | 367 | 428 | - | - | |
Hepe10g0232 | 455 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 367 | 428 | - | - | |
Hepe10g0232 | 455 | ProSiteProfiles | ELK domain profile. | 346 | 366 | IPR005539 | GO:0003677(InterPro) | |
Hepe10g0232 | 455 | Pfam | ELK domain | 346 | 367 | IPR005539 | GO:0003677(InterPro) | |
Hepe10g0232 | 455 | SMART | ELK_2 | 346 | 367 | IPR005539 | GO:0003677(InterPro) | |
Hepe10g0232 | 455 | MobiDBLite | consensus disorder prediction | 11 | 60 | - | - | |
Hepe10g0232 | 455 | SUPERFAMILY | Homeodomain-like | 368 | 432 | IPR009057 | - | |
Hepe10g0232 | 455 | MobiDBLite | consensus disorder prediction | 147 | 174 | - | - | |
Hepe10g0232 | 455 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 180 | 428 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe10g0232 | 455 | SMART | KNOX1_2 | 182 | 226 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe10g0232 | 455 | Pfam | KNOX2 domain | 239 | 288 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe10g0232 | 455 | Pfam | Homeobox KN domain | 386 | 425 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe10g0232 | 455 | SMART | KNOX2_2 | 233 | 289 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe10g0232 | 455 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Hepe10g0232 | 455 | ProSiteProfiles | 'Homeobox' domain profile. | 366 | 429 | IPR001356 | GO:0003677(InterPro) | |
Hepe10g0232 | 455 | SMART | HOX_1 | 368 | 433 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe06g1595 | Hepe-Chr6:66740123 | Hepe10g0232 | Hepe-Chr10:2468647 | 2.07e-124 | dispersed | |
Hepe09g0208 | Hepe-Chr9:1730709 | Hepe10g0232 | Hepe-Chr10:2468647 | 3.55e-29 | dispersed | |
Hepe10g0232 | Hepe-Chr10:2468647 | Hepe10g1622 | Hepe-Chr10:52932223 | 4.58e-29 | dispersed | |
Hepe01g1989 | Hepe-Chr1:84698643 | Hepe10g0232 | Hepe-Chr10:2468647 | 1.39e-229 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56439 | PF03791 | KNOX2 | 3.00E-19 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0232 | - | - | - | 0.0 |