Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0241 ATGGAGCTTTTTCACCTACCTACTGTATCAGCACTCATCTCTTCCATTTGCGTTGCGTCGATTCTCGTCTTCGTTCTCGTCTCCGACGACAAGTATTATTCCAACGGATTCACAACCTTCTTCGCTAGCTTCAAATTTCAAACCGCGCATGCTTTGCATAATCATGAATTCACTCCAATTTCCATTCGAAGCTCGTCCGACGAGTACTTGCTCGCTCATCGCCTTGATCAAATCAAGAATGTGAAGAAAACAAAACTCAGCCGAGAAAAAAAGCTCGAACTAGGGCTCGCTCAAGCTAGGGCTTCCATTAGCAGAGCAACAAAGATCTCCAACAACCTATCCACCACCGTCGATTTCGTTCCTTCTTTCTCAGTTTATCATAATCCCCGCGCATTTTATCAGAGCTACGTAGAAATGGAGAAGAGATTCAAAGTGTACGTATACCCGAACGGGGAATTACCGATTACGCATGATGGACCGTGTAAAAACATATACACAATTGAAGGGAGATTCATACACGAGATGGAGCATGGGCGTAACGGATTCAGGACGTCGGATCCGAGTCGGGCCCAGGTGTTGTTCATGCCTTTCAGCGTGGCTTGGATGGTGAAGTACATATATAAATCCGAAAGCTTCGATCAAACTCCGCTGCGGGATTTTGTGAGTGATTACGTGAGGGTGGTGTCTGAGAAGTACCCGTTTTGGAACCAAACAAGTGGGGCTGACCACTTCATGCTTGCATGCCATGATTGGGGTCCAATTGCATCAGAAGGAAACCCCTTCCTTTACAACACATCCATCCGTGTCCTCTGTAACGCCAACTCCTCCGAAGGATTCAACCCACAAAAAGACGTCAGCCTCCCGGAGATCCACCTCTACACCGGCGACATATCACCGAAGCTCCTCCTGCCGCCGCCTCCGGACTCCCAACGTCCCCACCTAGCATTCTTCGCCGGCGGTGTCCACGGTCCAATCAGACCGATAGTCCTAAAACACTGGAAAGACCGCGACGGCGATATCCGTGTCTACGAGTACCTCCCAAAGCAACTAGACTATTACGAGGAAATGCTCGAATCCAGATTCTGCCTGTGCCCTAGCGGGTACGAAGTGGCGAGCCCCCGAATCGTGGAGGCGATTTACGCCGAATGCGTGCCGGTGATCATCTCGGAGCGGTATGTTTTGCCGTTCAGCGACGTGTTGAGATGGGAAGGGTTTTCGATAGAGTTGGGGGTGTCGGAGATTCCAAGGTTGAAGGAGATTTTGATGGGGGTGTCGGAGGAAAGGTATAGGAAGCTTAAGGAAGGGTTGAGGATTGTGAGGAAGCACTTTGTGTTGAACCATCCGGCTAAGAGATTGGATGTTTTTCATATGATTTTGCATTCTGTGTGGCTTAGGAGATTGAATGTAAGACTTGCGTAG 1419 49.12 MELFHLPTVSALISSICVASILVFVLVSDDKYYSNGFTTFFASFKFQTAHALHNHEFTPISIRSSSDEYLLAHRLDQIKNVKKTKLSREKKLELGLAQARASISRATKISNNLSTTVDFVPSFSVYHNPRAFYQSYVEMEKRFKVYVYPNGELPITHDGPCKNIYTIEGRFIHEMEHGRNGFRTSDPSRAQVLFMPFSVAWMVKYIYKSESFDQTPLRDFVSDYVRVVSEKYPFWNQTSGADHFMLACHDWGPIASEGNPFLYNTSIRVLCNANSSEGFNPQKDVSLPEIHLYTGDISPKLLLPPPPDSQRPHLAFFAGGVHGPIRPIVLKHWKDRDGDIRVYEYLPKQLDYYEEMLESRFCLCPSGYEVASPRIVEAIYAECVPVIISERYVLPFSDVLRWEGFSIELGVSEIPRLKEILMGVSEERYRKLKEGLRIVRKHFVLNHPAKRLDVFHMILHSVWLRRLNVRLA 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2552060 2555701 + Hsped.10g02410.1 Hepe10g0241 580788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0241 472 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 56 466 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
Hepe10g0241 472 Pfam Exostosin family 140 422 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0241 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0864 Hepe-Chr5:26486099 Hepe10g0241 Hepe-Chr10:2552060 6.26e-67 dispersed
Hepe06g0253 Hepe-Chr6:9185928 Hepe10g0241 Hepe-Chr10:2552060 9.07e-88 dispersed
Hepe06g0256 Hepe-Chr6:9254856 Hepe10g0241 Hepe-Chr10:2552060 5.58e-87 dispersed
Hepe09g0794 Hepe-Chr9:7735973 Hepe10g0241 Hepe-Chr10:2552060 1.52e-88 dispersed
Hepe09g0796 Hepe-Chr9:7743123 Hepe10g0241 Hepe-Chr10:2552060 1.47e-93 dispersed
Hepe03g1994 Hepe-Chr3:77158701 Hepe10g0241 Hepe-Chr10:2552060 5.40e-87 transposed
Hepe04g0992 Hepe-Chr4:64463208 Hepe10g0241 Hepe-Chr10:2552060 5.43e-156 transposed
Hepe06g1691 Hepe-Chr6:67903982 Hepe10g0241 Hepe-Chr10:2552060 1.65e-101 transposed
Hepe10g0241 Hepe-Chr10:2552060 Hepe08g2505 Hepe-Chr8:66320148 7.75e-138 wgd
Hepe10g0241 Hepe-Chr10:2552060 Hepe09g0644 Hepe-Chr9:6026604 1.93e-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g503 Blo01g01393 . . . . Bpe02g00556 . . Cmo05g00377 . . Cma05g00375 . . Sed01g1382 . . Bhi04g00016 Tan02g2733 Cmetu03g0444 . Hepe10g0241 . Lcy13g1800 . . . . . . . Cone4ag1775 Cone7ag1691 . . . . . Cme03g01604 . . . . . . . . . . . . . . Car05g00319 Cpe11g00321 . . . . . . . . Cla08g01344 Cam08g1807 Cec08g1386 Cco08g1515 Clacu08g1500 . Cre08g1287 Lsi08g01216 . Chy03g01109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012011 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30