Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0257 ATGGAAGAAATGGGAGAAACAAGAGACAACGAATACGAGGAAGAGCTCCTCGACTATGAGGAAGAGGAAGAGAAGGCACCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGCTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTGGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCGATTCTCGGGATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGGAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCACTAGTTCTGTGCCATACCAGGGAGCTTGCATACCAGATCTGTCATGAGTTTGAAAGGTTCAGCACTTATCTCTCCGATCTGAAGGTCGCTGTCTTCTACGGTGGGGTGAATATTAAAATTCATAAAGATCTTCTGAAAAATGAATGCCCCCATATTGTTGTTGGAACACCGGGAAGGATATTGGCATTGTCAAGAGAAAAGGATCTCTCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTTGATATGCGAAGGGACGTACAAGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGTCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAATTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTCCCCTCTATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGATTTAAGGAAGGACATAAGAGGATTCTTGTGGCTACGGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTGAACATTGTTATCAACTATGACATGCCAGATTCGGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTTGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACATGCCATCATAG 1293 42.77 MEEMGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLSDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2666528 2671747 + Hsped.10g02570.1 Hepe10g0257 580804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0257 430 CDD DEADc_DDX39 48 255 - -
Hepe10g0257 430 Gene3D - 262 429 IPR027417 -
Hepe10g0257 430 MobiDBLite consensus disorder prediction 1 33 - -
Hepe10g0257 430 FunFam DEAD-box ATP-dependent RNA helicase 56-like 37 255 - -
Hepe10g0257 430 FunFam DEAD-box ATP-dependent RNA helicase 262 430 - -
Hepe10g0257 430 Pfam Helicase conserved C-terminal domain 278 386 IPR001650 -
Hepe10g0257 430 SMART helicmild6 305 386 IPR001650 -
Hepe10g0257 430 CDD SF2_C_DEAD 266 395 - -
Hepe10g0257 430 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 413 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Hepe10g0257 430 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 49 77 IPR014014 GO:0003724(InterPro)
Hepe10g0257 430 Pfam DEAD/DEAH box helicase 74 239 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Hepe10g0257 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 397 IPR027417 -
Hepe10g0257 430 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 80 253 IPR014001 -
Hepe10g0257 430 Gene3D - 45 261 IPR027417 -
Hepe10g0257 430 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 281 426 IPR001650 -
Hepe10g0257 430 SMART ultradead3 68 269 IPR014001 -
Hepe10g0257 430 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1404 Hepe-Chr8:16548923 Hepe10g0257 Hepe-Chr10:2666528 4.62e-74 dispersed
Hepe10g0257 Hepe-Chr10:2666528 Hepe05g1935 Hepe-Chr5:69665207 1.13e-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0257 K12812 - csv:101217346 832.787