Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0257 | ATGGAAGAAATGGGAGAAACAAGAGACAACGAATACGAGGAAGAGCTCCTCGACTATGAGGAAGAGGAAGAGAAGGCACCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGCTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTGGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCGATTCTCGGGATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGGAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCACTAGTTCTGTGCCATACCAGGGAGCTTGCATACCAGATCTGTCATGAGTTTGAAAGGTTCAGCACTTATCTCTCCGATCTGAAGGTCGCTGTCTTCTACGGTGGGGTGAATATTAAAATTCATAAAGATCTTCTGAAAAATGAATGCCCCCATATTGTTGTTGGAACACCGGGAAGGATATTGGCATTGTCAAGAGAAAAGGATCTCTCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTTGATATGCGAAGGGACGTACAAGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGTCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAATTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTCCCCTCTATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGATTTAAGGAAGGACATAAGAGGATTCTTGTGGCTACGGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTGAACATTGTTATCAACTATGACATGCCAGATTCGGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTTGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACATGCCATCATAG | 1293 | 42.77 | MEEMGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLSDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2666528 | 2671747 | + | Hsped.10g02570.1 | Hepe10g0257 | 580804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0257 | 430 | CDD | DEADc_DDX39 | 48 | 255 | - | - | |
Hepe10g0257 | 430 | Gene3D | - | 262 | 429 | IPR027417 | - | |
Hepe10g0257 | 430 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Hepe10g0257 | 430 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 37 | 255 | - | - | |
Hepe10g0257 | 430 | FunFam | DEAD-box ATP-dependent RNA helicase | 262 | 430 | - | - | |
Hepe10g0257 | 430 | Pfam | Helicase conserved C-terminal domain | 278 | 386 | IPR001650 | - | |
Hepe10g0257 | 430 | SMART | helicmild6 | 305 | 386 | IPR001650 | - | |
Hepe10g0257 | 430 | CDD | SF2_C_DEAD | 266 | 395 | - | - | |
Hepe10g0257 | 430 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 49 | 413 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Hepe10g0257 | 430 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 49 | 77 | IPR014014 | GO:0003724(InterPro) | |
Hepe10g0257 | 430 | Pfam | DEAD/DEAH box helicase | 74 | 239 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Hepe10g0257 | 430 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 118 | 397 | IPR027417 | - | |
Hepe10g0257 | 430 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 80 | 253 | IPR014001 | - | |
Hepe10g0257 | 430 | Gene3D | - | 45 | 261 | IPR027417 | - | |
Hepe10g0257 | 430 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 281 | 426 | IPR001650 | - | |
Hepe10g0257 | 430 | SMART | ultradead3 | 68 | 269 | IPR014001 | - | |
Hepe10g0257 | 430 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g1404 | Hepe-Chr8:16548923 | Hepe10g0257 | Hepe-Chr10:2666528 | 4.62e-74 | dispersed | |
Hepe10g0257 | Hepe-Chr10:2666528 | Hepe05g1935 | Hepe-Chr5:69665207 | 1.13e-79 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0257 | K12812 | - | csv:101217346 | 832.787 |