Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0275 ATGAGTAACTTTTCGATCATCGTTCCCCTGCCTTCGAACCTGATCACCGATCCGGCGAACCCAGACTGGATGAGCAAAGGCGACAACGCCTGGCAGATGACGGCGGCGACGCTGGTCGGACTACAGAGCGTGCCCGGTCTGATCATCCTCTACGGCGGCGCCGTAAAAAAGAAGTGGGCCATAAACTCTGCCTTCATGGCTCTGTACGCGTTCGCGTGCGTTCTGGTGTGTTGGGTCGGGTGGGGGTACCGGCTGTCGTTCGGCGACAAGCTGCTGCCGTTCTGGGGGAAGCTGAATGTGGCGTTGGATCAAGAGTTTCTGCTGGAACAAGCGTTCAGTGGGAAGCTGCCGTCGGCCACTATGGTGTTTTTTCAGTTCGTTTTTGCGGCGATTACTCTGGTTTTGATCGCCGGAGCTCTGCTTGGGAGGATGAATTTCTACGCTTGGATGCTGTTTGTGCCGCTTTGGCTGACGTTTTCTTACACTTTTGTGGCGTTTAGTATTTGGAGTCCTAATGGGTTTTTTTACAAGATGGGACTTATTGATTACTCCGGTGGATATGTCATTCATTTGTCCTCTGGAGTTGCTGGCTTTACGGCTGCCTATTGGGTGGGGCCACGTCTATCGAAAGACAGAGAAAGCTTCCCTCCGAACAACATTCTTCTGATGCTGGCCGGAGCCGGTTTGTTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCGTACGCCGCCAACATCGACGCCTCACTGGCGGTTCTGAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCGTCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGAATGATCACCGGCCTTGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCGGCCATTATAATGGGATTGCTATCAGGCTCGATCCCGTGGTTCACAATGATGGTGGTCCACAAGAAATCTGCCATCCTTCAAAAGGTTGACGACACAATGGCAGTGTTCCACACCCACGCCATCGCGGGCAGCTTGGGCGGCATTTTGAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTACTATGGTGCCTACAACAAGTACATTGGCCTATTCTACGGCTTCAGCACAAGCCAAGTCAAACTCGGCTTTCGCCAGCTCGGTGTCCAACTCCTTGGAATCCTCTTCGTCACCATCCTAAACATCATCGTCACTAGCCTCATATGCGTCGCGCTCCAATACATTGTCCCCCTCCGAATGTCCGAGGAGGACATGGCCATCGGCGACGAGGCCGCCCATGGCGAAGAGGCCTATGCCATTTGGGGGCAGGGCGAGAAGATGGATTCTTCTAAGTATGATATTGAGATCCCAGTTACGACGAAGCATAGACATGCAGGCCATGTTGAAATGGCTTAA 1434 54.32 MSNFSIIVPLPSNLITDPANPDWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLLPFWGKLNVALDQEFLLEQAFSGKLPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFYKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGLLSGSIPWFTMMVVHKKSAILQKVDDTMAVFHTHAIAGSLGGILSGIFAEPRLNFVYYGAYNKYIGLFYGFSTSQVKLGFRQLGVQLLGILFVTILNIIVTSLICVALQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEIPVTTKHRHAGHVEMA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2886008 2889519 - Hsped.10g02750.1 Hepe10g0275 580822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0275 477 Pfam Ammonium Transporter Family 30 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe10g0275 477 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe10g0275 477 FunFam Ammonium transporter 12 447 - -
Hepe10g0275 477 PANTHER AMMONIUM TRANSPORTER MEP2 22 456 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Hepe10g0275 477 NCBIfam ammonium transporter 28 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe10g0275 477 Gene3D Ammonium transporter AmtB like domains 13 448 IPR029020 -
Hepe10g0275 477 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Hepe10g0275 477 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Hepe10g0275 477 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005886(InterPro)
Hepe10g0275 477 SUPERFAMILY Ammonium transporter 23 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1639 Hepe-Chr4:71733747 Hepe10g0275 Hepe-Chr10:2886008 1.60e-192 dispersed
Hepe05g0062 Hepe-Chr5:633934 Hepe10g0275 Hepe-Chr10:2886008 4.32e-184 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0275 K03320 - csv:101210590 882.863