Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe10g0281 | ATGTCGACCGCCGTCGTCTTCAGACATTCTAGCTCCTGGGCTCGCGCTCTCGTCAACATCTCGCCGTACACTTTCTCCGCCGTCGGCATCGCCGTCGCTATCGGCGTTTCCGTTCTCGGCGCCGCCTGGGGGATTTACATTACCGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCGAAGAACTTGATCAGTGTGATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCTATTATCTTACAGACCAAGTTAGAGAGTGTGCCAGCATCTCAGATATATGCCCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCGAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCTCTCTTTGTGAAGATTCTTGTCATCGAGATCTTTGGCAGTGCACTCGGTTTGTTCGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACGGGTTGA | 549 | 49.36 | MSTAVVFRHSSSWARALVNISPYTFSAVGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG | 182 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2934990 | 2936713 | - | Hsped.10g02810.1 | Hepe10g0281 | 580828 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe10g0281 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 25 | 87 | - | - | |
| Hepe10g0281 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 104 | 172 | IPR035921 | - | |
| Hepe10g0281 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 21 | 90 | IPR035921 | - | |
| Hepe10g0281 | 182 | FunFam | V-type proton ATPase proteolipid subunit | 23 | 178 | - | - | |
| Hepe10g0281 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 107 | 171 | - | - | |
| Hepe10g0281 | 182 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 9 | 175 | - | GO:0016021(PANTHER) | |
| Hepe10g0281 | 182 | Pfam | ATP synthase subunit C | 29 | 87 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Hepe10g0281 | 182 | Pfam | ATP synthase subunit C | 112 | 171 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Hepe10g0281 | 182 | Gene3D | - | 23 | 177 | IPR035921 | - | |
| Hepe10g0281 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 67 | 91 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Hepe10g0281 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 123 | 149 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Hepe10g0281 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 41 | 65 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Hepe10g0281 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 150 | 173 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe10g0281 | K03661 | - | - | csv:101221052 | 318.161 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Hepe08g1343 | . | 1 | 1001 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1628.2 | |
| Hepe08g0853 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1332.8 | |
| Hepe10g0122 | . | 1 | 720 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 9.5e-266 | 913.3 | |
| Hepe02g0483 | . | 4 | 535 | Primary Pumps ATPases(2) | AT2G28520 | 67.7 | 4.2e-213 | 738.4 | |
| Hepe10g0122 | . | 1 | 720 | Primary Pumps ATPases(2) | AT2G21410 | 72.6 | 1.5e-311 | 1065.4 | |
| Hepe08g0853 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.0 | 1.0e-296 | 1016.1 | |
| Hepe02g0483 | . | 4 | 540 | Primary Pumps ATPases(2) | AT2G21410 | 79.5 | 5.6e-250 | 860.9 | |
| Hepe10g0122 | . | 1 | 720 | Primary Pumps ATPases(2) | AT4G39080 | 73.2 | 6.3e-310 | 1060.1 | |
| Hepe08g0853 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 1.0e-296 | 1016.1 | |
| Hepe02g0483 | . | 4 | 540 | Primary Pumps ATPases(2) | AT4G39080 | 80.3 | 1.1e-250 | 863.2 | |
| Hepe10g0129 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 6.4e-61 | 230.3 | |
| Hepe01g2283 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 95.7 | 1.4e-60 | 229.2 | |
| Hepe10g0130 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 95.7 | 1.4e-60 | 229.2 | |
| Hepe10g0129 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 81.3 | 6.5e-67 | 250.8 | |
| Hepe01g2283 | . | 1 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 78.5 | 1.4e-66 | 249.6 | |
| Hepe10g0130 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 78.3 | 1.4e-66 | 249.6 | |
| Hepe10g0129 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 2.0e-74 | 275.4 | |
| Hepe10g0130 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 96.3 | 4.5e-74 | 274.2 | |
| Hepe01g2283 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 95.7 | 1.3e-73 | 272.7 | |
| Hepe10g0130 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 95.1 | 7.3e-53 | 203.4 | |
| Hepe01g2283 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 95.1 | 9.5e-53 | 203.0 | |
| Hepe10g0129 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Hepe10g0281 | . | 9 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.3 | 1.3e-71 | 266.5 | |
| Hepe10g0129 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.8e-60 | 228.8 | |
| Hepe01g2283 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 95.7 | 4.1e-60 | 227.6 | |
| Hepe10g0130 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 95.7 | 4.1e-60 | 227.6 | |
| Hepe10g0281 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 75.7 | 8.0e-76 | 280.4 | |
| Hepe10g1192 | . | 1 | 872 | Primary Pumps ATPases(2) | AT1G07810 | 80.0 | 0.0e+00 | 1344.7 | |
| Hepe10g1192 | . | 1 | 872 | Primary Pumps ATPases(2) | AT1G07670 | 79.6 | 0.0e+00 | 1343.2 | |
| Hepe08g1343 | . | 1 | 1001 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1628.2 | |
| Hepe10g1192 | . | 22 | 872 | Primary Pumps ATPases(2) | AT4G00900 | 66.1 | 0.0e+00 | 1082.8 | |
| Hepe09g1807 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 82.5 | 1.5e-56 | 215.7 | |
| Hepe10g1189 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 82.5 | 1.5e-56 | 215.7 | |
| Hepe02g0408 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 2.1e-268 | 921.4 | |
| Hepe02g2443 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 80.3 | 9.3e-176 | 613.2 | |
| Hepe02g0058 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.2 | 2.6e-116 | 415.2 | |
| Hepe10g1401 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 80.8 | 5.8e-116 | 414.1 | |
| Hepe08g1504 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.9 | 2.4e-207 | 718.4 | |
| Hepe04g1087 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.6 | 1.6e-206 | 715.7 | |
| Hepe10g0129 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 2.0e-74 | 275.4 | |
| Hepe10g0130 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 96.3 | 4.5e-74 | 274.2 | |
| Hepe01g2283 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 95.7 | 1.3e-73 | 272.7 | |
| Hepe02g0408 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.7 | 5.5e-269 | 923.3 | |
| Hepe02g1671 | . | 1 | 183 | Primary Pumps ATPases(2) | AT1G64200 | 75.3 | 1.1e-66 | 250.0 | |
| Hepe02g0408 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 2.3e-267 | 917.9 | |
| Hepe08g0853 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1332.8 | |
| Hepe10g0122 | . | 1 | 720 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 9.5e-266 | 913.3 | |
| Hepe02g0483 | . | 4 | 535 | Primary Pumps ATPases(2) | AT2G28520 | 67.7 | 4.2e-213 | 738.4 | |
| Hepe07g1541 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 1.4e-191 | 665.6 | |
| Hepe02g1671 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 79.6 | 3.0e-92 | 335.1 | |
| Hepe03g2130 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 92.9 | 0.0e+00 | 1168.3 | |
| Hepe02g0408 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 2.1e-268 | 921.4 | |
| Hepe02g0408 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.7 | 5.5e-269 | 923.3 | |
| Hepe02g0408 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 2.3e-267 | 917.9 | |
| Hepe02g2443 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 80.3 | 9.3e-176 | 613.2 | |
| Hepe02g0058 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.2 | 2.6e-116 | 415.2 | |
| Hepe10g1401 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 80.8 | 5.8e-116 | 414.1 | |
| Hepe02g1671 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 79.6 | 3.0e-92 | 335.1 | |
| Hepe02g1671 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 69.0 | 2.0e-75 | 279.3 | |
| Hepe02g1671 | . | 1 | 183 | Primary Pumps ATPases(2) | AT1G64200 | 75.3 | 1.1e-66 | 250.0 | |
| Hepe09g1807 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 82.5 | 1.5e-56 | 215.7 | |
| Hepe10g1189 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 82.5 | 1.5e-56 | 215.7 | |
| Hepe08g1504 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.9 | 2.4e-207 | 718.4 | |
| Hepe04g1087 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.6 | 1.6e-206 | 715.7 | |
| Hepe08g0853 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1332.8 | |
| Hepe10g0122 | . | 1 | 720 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 9.5e-266 | 913.3 | |
| Hepe02g0483 | . | 4 | 535 | Primary Pumps ATPases(2) | AT2G28520 | 67.7 | 4.2e-213 | 738.4 | |
| Hepe10g0122 | . | 1 | 720 | Primary Pumps ATPases(2) | AT2G21410 | 72.6 | 1.5e-311 | 1065.4 | |
| Hepe08g0853 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.0 | 1.0e-296 | 1016.1 | |
| Hepe02g0483 | . | 4 | 540 | Primary Pumps ATPases(2) | AT2G21410 | 79.5 | 5.6e-250 | 860.9 | |
| Hepe10g0122 | . | 1 | 720 | Primary Pumps ATPases(2) | AT4G39080 | 73.2 | 6.3e-310 | 1060.1 | |
| Hepe08g0853 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 1.0e-296 | 1016.1 | |
| Hepe02g0483 | . | 4 | 540 | Primary Pumps ATPases(2) | AT4G39080 | 80.3 | 1.1e-250 | 863.2 | |
| Hepe10g0129 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 6.4e-61 | 230.3 | |
| Hepe01g2283 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 95.7 | 1.4e-60 | 229.2 | |
| Hepe10g0130 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 95.7 | 1.4e-60 | 229.2 | |
| Hepe10g0130 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 95.1 | 7.3e-53 | 203.4 | |
| Hepe01g2283 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 95.1 | 9.5e-53 | 203.0 | |
| Hepe10g0129 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Hepe10g0129 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.8e-60 | 228.8 | |
| Hepe01g2283 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 95.7 | 4.1e-60 | 227.6 | |
| Hepe10g0130 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 95.7 | 4.1e-60 | 227.6 | |
| Hepe10g0129 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 81.3 | 6.5e-67 | 250.8 | |
| Hepe01g2283 | . | 1 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 78.5 | 1.4e-66 | 249.6 | |
| Hepe10g0130 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 78.3 | 1.4e-66 | 249.6 | |
| Hepe10g0129 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 2.0e-74 | 275.4 | |
| Hepe10g0130 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 96.3 | 4.5e-74 | 274.2 | |
| Hepe01g2283 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 95.7 | 1.3e-73 | 272.7 | |
| Hepe10g0281 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 75.7 | 8.0e-76 | 280.4 | |
| Hepe10g0281 | . | 9 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.3 | 1.3e-71 | 266.5 | |
| Hepe07g1541 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 1.2e-198 | 689.1 | |
| Hepe07g1541 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 1.4e-191 | 665.6 | |
| Hepe10g1192 | . | 1 | 872 | Primary Pumps ATPases(2) | AT1G07810 | 80.0 | 0.0e+00 | 1344.7 | |
| Hepe10g1192 | . | 22 | 872 | Primary Pumps ATPases(2) | AT4G00900 | 66.1 | 0.0e+00 | 1082.8 | |
| Hepe08g1343 | . | 1 | 1001 | Primary Pumps ATPases(2) | AT1G10130 | 82.5 | 0.0e+00 | 1628.2 | |
| Hepe10g1192 | . | 1 | 872 | Primary Pumps ATPases(2) | AT1G07670 | 79.6 | 0.0e+00 | 1343.2 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0001947 | 2 | 4 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 2 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 3 | 3 | 2 | 66 |