Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0285 ATGGTTTTGGCGAAAAGGGTTGTTGTTTTTTCGCTTTTGGGTTTGGTGGGTTTGCCCGAGAAGAACTCAATAGCAGCTGGAGGAGCTTTGTCTGGATTCGAAAAAATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCATGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCGTTTCAAGCAGAGGGAAAAGTGTCTTCGGATCCTGTGGCTATCGATGCGCCCGGAGGTTTTCTGTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCGTCTTATATCGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAACAGCAGCAGCAGCAACCACAGTCACAACAACAGCAACCACAACACATGCAGATGCTTCTGATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATCAGCAGCAACAGCAACAACATCAGCAGCAACAGCAACAGCAGCCACAGCAGCAGCAACAACAGACCCAGCAACAGCAACAGCAGCGCAGAGATGGAGCCCAACTCTTAAATGGAACTTCAAATGGTTTTGTTGGAAACGATCCTCTTATGCGCCAGAATCCTGGATCTGTAAATGCGTTGGCTACAAAAATGTATGAGGACAGATTAAAACTGCCCCTCCAGAGGGATTCTCTGGATGATGCGGCTATGAAACAAAGATATGGGGAAAATGTTGGGCAGCTGTTGGACCAAAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTACAGCCGGGGGAATGTCTCCTCAAGTTCAATCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCCGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCTCTCACTGGGCTAGAGCAGCTACGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTCCTCAACCTTTTCCTCAGCTTCAGATGTTGACACCGCAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCTGTTAATGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGACAAAAGATGGACTATCAAATTCTGTTGGTGATGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTTTTGCCACGTGGAGACAACACGGACATGATCCTTAAGATAAAAATGGCTCAATTGCAGCAGCAACAACAGCAGCAACAAAATAACAGCCAGCAACAGCAGCAGCAGCAGCAACTTCAGCAGCATGCTCTTTCAAATCAACAATCACAAAGCTCAAACCACAATATGCACCAGCAAGAAAAAATGGGGGGTGCTGGCAGTGTCACCATGGACGGTAGCATGTCAAACTCATTTCGTGGAAATGATCAGGTTTCAAAAAATCAGACTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGATGGCACTGGCACTTTTACATCCCCCTCAAATCAGTTGTGGGATGACAAAGAACTTGAATTGCAGGCTGATATGGACCGCTTCGTGGAGGACGGGTCTCTCGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTAGGGCGCTGTATGGATGGCAGCAAAGGGTTCACATTTACGGAGGTGAATGCTGTTAGAGCAAGCTCAAGCAAAGTTTCCTCTTGCCACTTTTCATTTGATGGAAAACTGCTAGCTAGTGGCGGCCATGATAAAAAGGCTGTATTATGGTACACGGAAAATTTAAAGCCGAAAACTTCACTTGAAGAACATGCTTCCATGATCACCGATGTTCGTTTTAGTCCTAGCATGCCTCGCCTCGCAACATCTTCATTCGATAGAACAGTCAGGGTTTGGGATGCTGACAATCACTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACTTTATCTGCTCTTGTGATGGTGATGGTGAGATTCGGTACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTACAGGCCAGTTGAGATTTCAACCTCGTCTCGGAAGATACTTCGCTGCTGCTGTGGACAATATTGTATCCATTTTTGATGTTGAGACACAAGCACGGGTGCATTCGTTACAGGGACATACCAAAACGGTTCATTCTCTCTGTTGGGATCCTTCTGGAGAGTTTCTGGCATCCGTTAGTGAGGATTCCGTTCGAGTGTGGACGCTTGCTTCGGGGAATGAGGGCGAATCCATTCACGAGTTGAGCTGCAACGGCAATAAGTTCCACTCTTGCGTTTTTCATCCCACCTATTCTACTTTGCTGGTCATTGGATGTTACCAGTCGTTAGAGCTTTGGAACACGACCGAGAACAAGACGATGACTCTATCAGCTCACGAGGGTTTAATATCTGCCTTAGCAGTGTCCACAACGTCGGGTCTGGTTGCTTCGGCCAGCCACGACAAGTTTATCAAGCTGTGGAAGTAA 2841 46.22 MVLAKRVVVFSLLGLVGLPEKNSIAAGGALSGFEKMSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQPQSQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQQHQQQQQQQPQQQQQQTQQQQQQRRDGAQLLNGTSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDQNHASILKSAAATSQSSGQVLHGTAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQAPQPFPQLQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMTKDGLSNSVGDVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQQQQQQQNNSQQQQQQQQLQQHALSNQQSQSSNHNMHQQEKMGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNAVRASSSKVSSCHFSFDGKLLASGGHDKKAVLWYTENLKPKTSLEEHASMITDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARVHSLQGHTKTVHSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEGLISALAVSTTSGLVASASHDKFIKLWK 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2996307 3003868 + Hsped.10g02850.1 Hepe10g0285 580832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0285 946 Coils Coil 453 481 - -
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 703 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 Pfam WD domain, G-beta repeat 911 945 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 Pfam WD domain, G-beta repeat 699 736 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 Pfam WD domain, G-beta repeat 825 859 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 Pfam WD domain, G-beta repeat 743 780 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 Pfam WD domain, G-beta repeat 663 693 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 704 739 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 Pfam LisH 45 71 IPR006594 GO:0005515(InterPro)
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 704 739 - -
Hepe10g0285 946 PANTHER TRANSCRIPTION ACTIVATOR MSS11 37 946 - GO:0005634(PANTHER)
Hepe10g0285 946 MobiDBLite consensus disorder prediction 122 165 - -
Hepe10g0285 946 Coils Coil 155 182 - -
Hepe10g0285 946 Gene3D - 798 946 IPR015943 GO:0005515(InterPro)
Hepe10g0285 946 MobiDBLite consensus disorder prediction 508 568 - -
Hepe10g0285 946 CDD WD40 658 946 - -
Hepe10g0285 946 ProSitePatterns Trp-Asp (WD) repeats signature. 723 737 IPR019775 -
Hepe10g0285 946 ProSiteProfiles LIS1 homology (LisH) motif profile. 43 75 IPR006594 GO:0005515(InterPro)
Hepe10g0285 946 MobiDBLite consensus disorder prediction 282 314 - -
Hepe10g0285 946 SMART Lish 43 75 IPR006594 GO:0005515(InterPro)
Hepe10g0285 946 SMART WD40_4 783 819 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 SMART WD40_4 866 905 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 SMART WD40_4 822 860 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 SMART WD40_4 907 946 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 SMART WD40_4 655 694 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 SMART WD40_4 697 736 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 SMART WD40_4 740 780 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 MobiDBLite consensus disorder prediction 184 224 - -
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 747 789 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 747 785 - -
Hepe10g0285 946 SUPERFAMILY WD40 repeat-like 657 946 IPR036322 GO:0005515(InterPro)
Hepe10g0285 946 MobiDBLite consensus disorder prediction 461 589 - -
Hepe10g0285 946 MobiDBLite consensus disorder prediction 461 501 - -
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 829 869 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 946 - -
Hepe10g0285 946 MobiDBLite consensus disorder prediction 282 337 - -
Hepe10g0285 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 946 IPR001680 GO:0005515(InterPro)
Hepe10g0285 946 Gene3D - 649 797 IPR015943 GO:0005515(InterPro)
Hepe10g0285 946 MobiDBLite consensus disorder prediction 417 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0285 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1753 Hepe-Chr5:67831277 Hepe10g0285 Hepe-Chr10:2996307 4.84e-189 transposed
Hepe10g0285 Hepe-Chr10:2996307 Hepe09g0731 Hepe-Chr9:6975195 2.17e-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56443 PF00400 WD40 0.0041 CL0186 Hepe TR