Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0294 ATGATGAAAGAACTTGAGTTTGCTGTCAGAATCACACGCTCCCAGTCTAATTCCTCGAGTAGACTCGGAGCTATTTCACTCAAAGGACTGCGCAAACGCGGTCACGCAGCAAACTCTGAGCGAGCACAACTAGATAAAAGTAATGCTTCTGCAACTATCTCTGTTGGCCTTCGGCACAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATCTCCTGTGAGAGCAATAATCTGGGTTACTTGCATGCTTCTAAAATTCAGGTGCAAGAGGTTGCACAGGCCGAATCACTTGAAGATTCACCCATTAAAGGGATGGCAGAATCACAAGGTACCTCTCCGATGATGAAGTCAGACAAAAAAGAGACAGCACAGGAGAACAAGTTTCAGAGTGTCATAGGATGCACAAATTATGCGTTCCCCGTGCCTTCAGAATCAAAAAACCACCAAATGAAAGATGAGGCTACAGTTTGTGAGAAATTAAACCATCTCGGTACTTTGGATGCTGTTTCAAACTCAGAAGATCCCCAAGCATGTACCCTATATGCCCATAATATTTATGATACTAATCGTGTAATAGAGCTTGATCAAAGGCCTTCTACTAATTATATGGAAAAGCTACAGAAAGATATCACTCCAATCATGCGAGGGATTCTTATCGATTGGCTAGTGGAGGTATCAGAAGAATATAAACTGGTCTCTGACACACTTTACCTCACTGTGAATCTCATTGATCGGTTGCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTCATTGGTGTTACCTGCATGTTAATCGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTTCATCACAGACAACACTTATACGAGAGGAGAGGTACTAAAAATGGAGGGTGAAGTACTGAACTTGCTAAACTTTCATCTCTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTGCAAGGAACCTTGCGACGAGTTCGAGCATTTGACAAATTATCTAGCAGAGTTGACTCTTGGTGAGTACAGCTTCCTCAGGTTTCTGCCTTCTGCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGAATCAACCAAATCAACCATGGAACTTGGCTCTAGAGAATTATACCAATTACAGTGTCTCCGAGCTAAAAACTCCAGTACTTGCCTTAGAAGATCTAAGATTGAACTCTACAGGTTGCCCTTTGAATGCCGTATTCCAGAAGTATAGACAACACAAGTTTGGAAGTGTGGCGACTTTAACCTCCACAAAAACAGTTCTCTCAGCTTTCCAAAACCAGACAGAAACCTGA 1350 42.22 MMKELEFAVRITRSQSNSSSRLGAISLKGLRKRGHAANSERAQLDKSNASATISVGLRHKRRAVLKDVTNISCESNNLGYLHASKIQVQEVAQAESLEDSPIKGMAESQGTSPMMKSDKKETAQENKFQSVIGCTNYAFPVPSESKNHQMKDEATVCEKLNHLGTLDAVSNSEDPQACTLYAHNIYDTNRVIELDQRPSTNYMEKLQKDITPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRLLSQSYIERHRLQLIGVTCMLIASKYEEVCAPFVEEFCFITDNTYTRGEVLKMEGEVLNLLNFHLSVPTTKTFLRRFVQVAQASCKEPCDEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILNQPNQPWNLALENYTNYSVSELKTPVLALEDLRLNSTGCPLNAVFQKYRQHKFGSVATLTSTKTVLSAFQNQTET 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3124022 3131637 + Hsped.10g02940.1 Hepe10g0294 580841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0294 449 CDD CYCLIN_AtCycA_like_rpt1 174 308 - -
Hepe10g0294 449 Gene3D - 198 311 - -
Hepe10g0294 449 Pfam Cyclin, N-terminal domain 185 311 IPR006671 -
Hepe10g0294 449 SUPERFAMILY Cyclin-like 173 310 IPR036915 -
Hepe10g0294 449 PANTHER CYCLINS 162 423 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe10g0294 449 FunFam Cyclin A1 301 432 - -
Hepe10g0294 449 SMART Cyclin_C_2 313 436 IPR004367 -
Hepe10g0294 449 FunFam Mitotic cyclin 6 198 298 - -
Hepe10g0294 449 SMART cyclin_7 220 304 IPR013763 -
Hepe10g0294 449 SMART cyclin_7 317 405 IPR013763 -
Hepe10g0294 449 Pfam Cyclin, C-terminal domain 313 434 IPR004367 -
Hepe10g0294 449 ProSitePatterns Cyclins signature. 215 246 IPR048258 -
Hepe10g0294 449 MobiDBLite consensus disorder prediction 97 116 - -
Hepe10g0294 449 SUPERFAMILY Cyclin-like 312 437 IPR036915 -
Hepe10g0294 449 PIRSF Cyclin_A_B_D_E 4 448 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe10g0294 449 Gene3D - 185 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1310 Hepe-Chr8:14851347 Hepe10g0294 Hepe-Chr10:3124022 3.85e-79 dispersed
Hepe08g1314 Hepe-Chr8:14928233 Hepe10g0294 Hepe-Chr10:3124022 3.87e-78 dispersed
Hepe01g2047 Hepe-Chr1:85134402 Hepe10g0294 Hepe-Chr10:3124022 2.14e-136 wgd
Hepe10g0294 Hepe-Chr10:3124022 Hepe03g1583 Hepe-Chr3:72721886 5.20e-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0294 K06627 - csv:101211578 739.184