Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0296 | ATGGACGTTCCCTCTGTGGAACTAAATTTTGAAAGTGACGGAGACTCTTACCCTTTATTAATGGCCCGACCAGAAAATTTTAACAGCAGCGAACATATCATAAACATAACCGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATAGTAGGAATTCAAACGGCTTAAATTCATCACAGCCTGAAGATAGACCTTCAAGTAGTGCACGAGCTCCCTTGTCTCAACCGTCAATTTCTTCTACTGGATCAAATTCTAGAAATGCCTCCTTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTTTATTGGCGTTATCGACACCGCAACCAGGCTTCAGAACAAGATTCTCTTCAATCCAGTCAGAATTCTTCTCGCATTAACGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCAGCATCCTGCCCCCTCCCCTAGAGGCAGTCAAGGGTCAGGAGTACTTACAGCAAGATTAAAAGTATTGATTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGTCTCTGAGGCTCCTAACTTGTACAGGCTATGCATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGTGCCACAACAGAATCTATTAATGCATTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGATAAGGAGCGAGTCATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCAAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAATGCGCTGTGCCCGCTTTGCAAAACCGAGGTTGGTGAGAGTATCGTTGGCTCTCTTGAGGGGACAAATAGACAACAACAGGGTGATTAA | 1257 | 43.12 | MDVPSVELNFESDGDSYPLLMARPENFNSSEHIINITGTGDSAPSSLPHSRNSNGLNSSQPEDRPSSSARAPLSQPSISSTGSNSRNASFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSSRINVPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVLTARLKVLIEYFKMGLDCFFAVWFVVGNVWIFGGHSSVSEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKSRSGDDSEGGGVVAAGTDKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKTEVGESIVGSLEGTNRQQQGD | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3146774 | 3151354 | + | Hsped.10g02960.1 | Hepe10g0296 | 580843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0296 | 418 | SMART | ring_2 | 356 | 396 | IPR001841 | - | |
Hepe10g0296 | 418 | ProSiteProfiles | Zinc finger RING-type profile. | 356 | 397 | IPR001841 | - | |
Hepe10g0296 | 418 | MobiDBLite | consensus disorder prediction | 34 | 90 | - | - | |
Hepe10g0296 | 418 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 402 | IPR013083 | - | |
Hepe10g0296 | 418 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Hepe10g0296 | 418 | Pfam | Ring finger domain | 356 | 397 | IPR001841 | - | |
Hepe10g0296 | 418 | FunFam | E3 ubiquitin-protein ligase | 339 | 405 | - | - | |
Hepe10g0296 | 418 | SUPERFAMILY | RING/U-box | 348 | 402 | - | - | |
Hepe10g0296 | 418 | MobiDBLite | consensus disorder prediction | 34 | 96 | - | - | |
Hepe10g0296 | 418 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 21 | 401 | - | - | |
Hepe10g0296 | 418 | SMART | ringv_2 | 355 | 397 | IPR011016 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe06g1213 | Hepe-Chr6:61688937 | Hepe10g0296 | Hepe-Chr10:3146774 | 3.92e-42 | dispersed | |
Hepe07g2290 | Hepe-Chr7:67244023 | Hepe10g0296 | Hepe-Chr10:3146774 | 6.08e-11 | dispersed | |
Hepe10g0296 | Hepe-Chr10:3146774 | Hepe10g1904 | Hepe-Chr10:55831717 | 2.21e-52 | dispersed | |
Hepe10g0296 | Hepe-Chr10:3146774 | Hepe05g0628 | Hepe-Chr5:9836517 | 1.71e-34 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0296 | - | - | - | 0.0 |