Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0296 ATGGACGTTCCCTCTGTGGAACTAAATTTTGAAAGTGACGGAGACTCTTACCCTTTATTAATGGCCCGACCAGAAAATTTTAACAGCAGCGAACATATCATAAACATAACCGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATAGTAGGAATTCAAACGGCTTAAATTCATCACAGCCTGAAGATAGACCTTCAAGTAGTGCACGAGCTCCCTTGTCTCAACCGTCAATTTCTTCTACTGGATCAAATTCTAGAAATGCCTCCTTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTTTATTGGCGTTATCGACACCGCAACCAGGCTTCAGAACAAGATTCTCTTCAATCCAGTCAGAATTCTTCTCGCATTAACGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCAGCATCCTGCCCCCTCCCCTAGAGGCAGTCAAGGGTCAGGAGTACTTACAGCAAGATTAAAAGTATTGATTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGTCTCTGAGGCTCCTAACTTGTACAGGCTATGCATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGTGCCACAACAGAATCTATTAATGCATTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGATAAGGAGCGAGTCATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCAAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAATGCGCTGTGCCCGCTTTGCAAAACCGAGGTTGGTGAGAGTATCGTTGGCTCTCTTGAGGGGACAAATAGACAACAACAGGGTGATTAA 1257 43.12 MDVPSVELNFESDGDSYPLLMARPENFNSSEHIINITGTGDSAPSSLPHSRNSNGLNSSQPEDRPSSSARAPLSQPSISSTGSNSRNASFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSSRINVPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVLTARLKVLIEYFKMGLDCFFAVWFVVGNVWIFGGHSSVSEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKSRSGDDSEGGGVVAAGTDKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKTEVGESIVGSLEGTNRQQQGD 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3146774 3151354 + Hsped.10g02960.1 Hepe10g0296 580843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0296 418 SMART ring_2 356 396 IPR001841 -
Hepe10g0296 418 ProSiteProfiles Zinc finger RING-type profile. 356 397 IPR001841 -
Hepe10g0296 418 MobiDBLite consensus disorder prediction 34 90 - -
Hepe10g0296 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 402 IPR013083 -
Hepe10g0296 418 MobiDBLite consensus disorder prediction 1 22 - -
Hepe10g0296 418 Pfam Ring finger domain 356 397 IPR001841 -
Hepe10g0296 418 FunFam E3 ubiquitin-protein ligase 339 405 - -
Hepe10g0296 418 SUPERFAMILY RING/U-box 348 402 - -
Hepe10g0296 418 MobiDBLite consensus disorder prediction 34 96 - -
Hepe10g0296 418 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 401 - -
Hepe10g0296 418 SMART ringv_2 355 397 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1213 Hepe-Chr6:61688937 Hepe10g0296 Hepe-Chr10:3146774 3.92e-42 dispersed
Hepe07g2290 Hepe-Chr7:67244023 Hepe10g0296 Hepe-Chr10:3146774 6.08e-11 dispersed
Hepe10g0296 Hepe-Chr10:3146774 Hepe10g1904 Hepe-Chr10:55831717 2.21e-52 dispersed
Hepe10g0296 Hepe-Chr10:3146774 Hepe05g0628 Hepe-Chr5:9836517 1.71e-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0296 - - - 0.0