Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0353 ATGGAGGTTGCCGAAGACGGGGAGGTCACCGGAATCGCCAAAAGCAGTAGCGACGGAGCCAATCAAGCTTCAAATTACAGAAATGGTGGTTTGAAAACCATGCCCTTCATAATCGTTAATGAGACATTTGAGAGAGTTGCAAGTGTTGGGCTATCTCCTAACATGGTGTTTTACTTGAGGGACGTTTTCGGGTTCCGAATTGCTTCTGCTTCTATCATTCTGTCTCTGTGGTCTGCTGCTTCCAATTCTTTGTCCATCGTTGGAGCTGTTCTTGCTGATTCTTACTTGGGACGTTTTCGTGTTATAATTCTTGGATCTTTCAGTAGCCTACTTGGTATGACTCTTTTGTGGTTAACAGCAATAATCCCACAACTGAAACCTTCATCTTGTTCCCCATCCGGAACATTGTGCAACTCTTCTAATCCTTACCAACTCGTTGTACTGTTCTCTTCGTTGGCATTTGTGTCCATTGGAGCTGGTTGCATCAGGCCGTGTTCTATAGCCTTTGGTGCAGACCAACTCACGAATGAGGAAAAACCCAATAACGAGAGTGTCTTGGATTCCTACTTCAATTGGTATTATGTGTCAATTGGAATATCTACGATTATTGCATTATCTCTGGTTGTGTACACTCAAGATAAATTTGGATGGGGAATTGGATTTGCAGTTCCTGCAGTTCTCATGCTTTTTTCTGTGCTGATATTCCTAGTGGGTTCTTCCATGTACGTGAAAGTGAAGCCTGCACAGAGTTTGCTAACTGGGTTTTTACAAGTGATTGTTGTGGCATTCAAGAACCGAAAATTGTCGCTTCCTCGTTGCAACTTTGATCAGTATTACCTTGGCCATGATCCAAAGTTTCTCATTCCGTCCAATTCTATGAGGTGTCTGAATAAGGCCTGTCTTATAAAAGACGCTGAGAACAATTTAAATCCAGATGACTCAGTATCCAATCCATGGAACCTGTGTTCTATGGATCAAGTTGAGTCACTCAAAGCTTTTCTACGAACCATCCCAATGTGGTCAGCAGGCATTCTCATGCTTGCCTGCGGAAATCAAAATTCATTTGGAACAATCCAAGCCAAGACTATGAACAGACACATCATCGGTAGTTTCGAAATCCCTGCAGGATCCATCTCTACTTTCACGATTGTTTCTTTATCTACATGGATCGTGTTTTACGAGCGAATAATAGTGCCTTTACTAGCAAGATTTGGTCATGCTGGAGGACTAAGTCCTAAATTGAGAATGGGAATTGGTCTGCTTCTCTTGTGCTTCGCAATGGCGATTTCGGCGGTCGTTGCAGGTACGAGGCGTCGACTTGCCATAGAACAAGGTTTAGAAGACCAACCAAATGCTGTCATTGACATGTCTGTTTTATGGATGGTGCCTCAATGTGTAGTCCTGGGAGTTGCTGAAGCTTTGAACTCGGTCGGACAGGTGGAGTATTTCTACTCGCAGTTGCCGAAGACGTTGTCGAGCGTCGCGGTTGCTCTATATTCAGTTGAGATGGCTGTAGCTAACTTGGTGGGAAGCATCCTTGTGAAGATAGTAAATGGTATAACAGGAGAAGGAAATAGGACAAGTTGGTTGGACAACAATATCAACAAGGGTCACTTGGATTACTTTTACTGGTTATGTGCTGCATTGGCTTTGATCAACTTCTTTGGTTATCTTGTATGTTGTTGGGCTTATGAGAGACAGGGCAGTGAATCAAATGAGCTAGAAGACTTTGAGTATAGGAACTTACCTTCATCTTAG 1758 43.12 MEVAEDGEVTGIAKSSSDGANQASNYRNGGLKTMPFIIVNETFERVASVGLSPNMVFYLRDVFGFRIASASIILSLWSAASNSLSIVGAVLADSYLGRFRVIILGSFSSLLGMTLLWLTAIIPQLKPSSCSPSGTLCNSSNPYQLVVLFSSLAFVSIGAGCIRPCSIAFGADQLTNEEKPNNESVLDSYFNWYYVSIGISTIIALSLVVYTQDKFGWGIGFAVPAVLMLFSVLIFLVGSSMYVKVKPAQSLLTGFLQVIVVAFKNRKLSLPRCNFDQYYLGHDPKFLIPSNSMRCLNKACLIKDAENNLNPDDSVSNPWNLCSMDQVESLKAFLRTIPMWSAGILMLACGNQNSFGTIQAKTMNRHIIGSFEIPAGSISTFTIVSLSTWIVFYERIIVPLLARFGHAGGLSPKLRMGIGLLLLCFAMAISAVVAGTRRRLAIEQGLEDQPNAVIDMSVLWMVPQCVVLGVAEALNSVGQVEYFYSQLPKTLSSVAVALYSVEMAVANLVGSILVKIVNGITGEGNRTSWLDNNINKGHLDYFYWLCAALALINFFGYLVCCWAYERQGSESNELEDFEYRNLPSS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3863911 3868613 - Hsped.10g03530.1 Hepe10g0353 580900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0353 585 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 29 565 - GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Hepe10g0353 585 MobiDBLite consensus disorder prediction 1 21 - -
Hepe10g0353 585 Pfam POT family 99 530 IPR000109 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Hepe10g0353 585 Gene3D MFS general substrate transporter like domains 6 573 IPR036259 -
Hepe10g0353 585 SUPERFAMILY MFS general substrate transporter 42 562 IPR036259 -
Hepe10g0353 585 CDD MFS_NPF1_2 34 564 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0353 K26551 - - vvi:100245775 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0767 Hepe-Chr9:7397145 Hepe10g0353 Hepe-Chr10:3863911 8.87e-175 dispersed
Hepe10g0353 Hepe-Chr10:3863911 Hepe10g1706 Hepe-Chr10:53762819 7.96e-121 dispersed
Hepe10g0353 Hepe-Chr10:3863911 Hepe10g0354 Hepe-Chr10:3891828 1.23e-158 tandem
Hepe10g0353 Hepe-Chr10:3863911 Hepe03g1538 Hepe-Chr3:72240917 1.29e-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g306 Blo01g01773 . . . Bpe02g01179 Bpe02g00171 . Bma01g02554 Cmo05g00622 . . Cma05g00596 . . . . . Bhi04g00838 . . . Hepe10g0353 . Lcy13g1408 . . . . . . . . . . Cone20ag0602 . . . Cme03g01737 . . . . . . . . . . . . . . Car05g00540 Cpe11g00522 . . . . . . . . Cla08g01227 Cam08g1686 Cec08g1265 Cco08g1385 Clacu08g1384 . Cre08g1169 Lsi08g01090 . Chy03g01243 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015409 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 2 3 0 0 12