Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0364 ATGAGTAGTAAGGAAGTTATTGATCTTCTTCGAACCTCCGAAACGGAGTCGAAGAAAATCAAACGCATCAGAAACAACGACGACAACAACAACAACGATCACAACAACGTCGAGAATAACAATAAATCGAACAACAACAGCAAACACCCGGTTTACCGGGGAGTTCGAATGAGAAACTGGGGGAAATGGGTGTCGGAAATTCGAGAGCCAAGAAAGAAATCCCGCATTTGGTTGGGAACTTTCCCCAGCCCTGAAATGGCCGCACGTGCGCACGACGTCGCCGCCGTGAGTATCAAAGGAAACGCCGCAATTCTCAATTTCCCTGACTTGGTTCACCTCCTCCCCCGCCCTGCCTCTCTCGCCCCTCGTGACGTCCAAGCCGCCGCTCACAAAGCTGCCCACATGCACAATTTTTCATCCTCCTCCGCCGCCGTTGTCGCCGCCGTGGACGACGGCGATGACGACGGCGAGTCCGATGAGCTGACGGAGATCGTCCAGCTGCCGAGTTTGGGAACGAGTAACTACGAGGAGTACTGTGGGGAGTTTGTTTTTGTGGATTCGGCGGCGGCGGAGGAGGAGTATTCAGGGTGGCTTAATTACCCGCCGCCGTGGCTGCAGAGCTTGGAGATGGAGGAGGAGGAGAATAATGAGAATGGTAAGTTGGGAGGAATGGGATTAATATCAACCACCAATTTCAAAGGATTGTTTTGGGATTATTGA 720 52.22 MSSKEVIDLLRTSETESKKIKRIRNNDDNNNNDHNNVENNNKSNNNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAAVSIKGNAAILNFPDLVHLLPRPASLAPRDVQAAAHKAAHMHNFSSSSAAVVAAVDDGDDDGESDELTEIVQLPSLGTSNYEEYCGEFVFVDSAAAEEEYSGWLNYPPPWLQSLEMEEEENNENGKLGGMGLISTTNFKGLFWDY 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3964166 3964885 + Hsped.10g03640.1 Hepe10g0364 580911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0364 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 185 IPR051032 -
Hepe10g0364 239 MobiDBLite consensus disorder prediction 32 50 - -
Hepe10g0364 239 MobiDBLite consensus disorder prediction 18 52 - -
Hepe10g0364 239 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Hepe10g0364 239 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677(InterPro)
Hepe10g0364 239 CDD AP2 52 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0364 239 SMART rav1_2 51 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0364 239 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0364 239 Pfam AP2 domain 50 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0364 239 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0364 239 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0364 239 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1438 Hepe-Chr2:18336072 Hepe10g0364 Hepe-Chr10:3964166 2.20e-44 dispersed
Hepe06g1118 Hepe-Chr6:59915307 Hepe10g0364 Hepe-Chr10:3964166 8.77e-42 dispersed
Hepe07g0192 Hepe-Chr7:1719533 Hepe10g0364 Hepe-Chr10:3964166 5.08e-32 dispersed
Hepe07g0193 Hepe-Chr7:1724985 Hepe10g0364 Hepe-Chr10:3964166 5.08e-32 dispersed
Hepe08g2612 Hepe-Chr8:68003145 Hepe10g0364 Hepe-Chr10:3964166 1.51e-45 dispersed
Hepe09g0797 Hepe-Chr9:7758930 Hepe10g0364 Hepe-Chr10:3964166 2.05e-53 dispersed
Hepe10g0364 Hepe-Chr10:3964166 Hepe10g1428 Hepe-Chr10:50939558 5.36e-21 dispersed
Hepe06g0322 Hepe-Chr6:11447789 Hepe10g0364 Hepe-Chr10:3964166 3.46e-29 transposed
Hepe01g2221 Hepe-Chr1:86907017 Hepe10g0364 Hepe-Chr10:3964166 1.59e-68 wgd
Hepe10g0364 Hepe-Chr10:3964166 Hepe03g1526 Hepe-Chr3:72132703 4.54e-45 wgd
Hepe10g0364 Hepe-Chr10:3964166 Hepe04g1449 Hepe-Chr4:70152923 1.39e-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56448 PF00847 AP2 3.80E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0364 K09286 - csv:101206242 244.973