Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0381 ATGGAAGCTCCTGAATATTTCCAAATCAATACCTACTGCTCCCAATTCGCCACCCACTCCTCCGACAACGACGCCGCCGCCGCCACCGGAGCTGAGCATTTCATCGTCGAGGAACTTCTCGATTTCTCCAACCACGACGACGGAGGAGGATTCTTCAATAATACTAACAATAATAATAATGCCACCTGCTTCCTCACTGGAAAGTCGGCCGATTCCTCCGCCGTTACGGTGGTTGAGAGCTGCAATTCCTCGTCGTTTTCCGGTTGCGAACCTAATTCCTTCTTTGCGGATTCTAATTTAGTCGAAAGCAATTTCACCAACGAACTCTGCGTTCCGTTCGACGATATAGCTGATTTGGAATGGCTTTCAAATTTAGTAGAGGAATCATTTTCCAGCGAGGATTTGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAACCCGACGAACCCCCCCAGTCCCGACAGCCCAGCACCGCCACCCACAGCCGAAACGCCGCCGCAATCTTCAAACCGGACATCGTTTCGGTTCCGGCGAAGGCACGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCTCTCTCTCCGACCACCTCCTCGTCGGAATCCGACATCGCCGTTGTCGTCACCACCGCCGGACCACCACACCCAGTCAAAAAGGTCCCTCCAAAGGTGACGACGGCGAAGAAGAAGGACTCCCCGGAGGTGGCCGGAGTGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAAACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTCTGTAACGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGACCCGCCGCCAGCCCCACATTCGTCCTCACGAAACACTCGAATTCCCACCGGAAAGTGCTGGAGCTCCGGCGGCAGAAGGAGGTTCTCAAAGCACAGCAACAGCAACCGCAACCATTGATTTTGGATCATCATCATCATCAGGATATGATCTTTGACTCATCCAACGGTGACGATTATCTCATCCATCAACATGTGGGGCCCGATTTCCGGCAGCTGATCTGA 1101 55.22 MEAPEYFQINTYCSQFATHSSDNDAAAATGAEHFIVEELLDFSNHDDGGGFFNNTNNNNNATCFLTGKSADSSAVTVVESCNSSSFSGCEPNSFFADSNLVESNFTNELCVPFDDIADLEWLSNLVEESFSSEDLQKLELISGVKVKPDEPPQSRQPSTATHSRNAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESDIAVVVTTAGPPHPVKKVPPKVTTAKKKDSPEVAGVSAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEVLKAQQQQPQPLILDHHHHQDMIFDSSNGDDYLIHQHVGPDFRQLI 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4185213 4187676 - Hsped.10g03810.1 Hepe10g0381 580928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0381 366 Pfam GATA zinc finger 254 288 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 MobiDBLite consensus disorder prediction 146 165 - -
Hepe10g0381 366 ProSitePatterns GATA-type zinc finger domain. 254 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 ProSiteProfiles GATA-type zinc finger domain profile. 248 284 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 FunFam GATA transcription factor 246 330 - -
Hepe10g0381 366 SMART GATA_3 248 298 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 250 312 - -
Hepe10g0381 366 CDD ZnF_GATA 253 300 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 PIRSF Txn_fac_GATA_plant 15 343 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Hepe10g0381 366 Gene3D - 247 329 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe10g0381 366 MobiDBLite consensus disorder prediction 220 247 - -
Hepe10g0381 366 PANTHER GATA TRANSCRIPTION FACTOR 33 320 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0381 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1433 Hepe-Chr2:18234531 Hepe10g0381 Hepe-Chr10:4185213 8.37e-74 dispersed
Hepe03g1519 Hepe-Chr3:72079978 Hepe10g0381 Hepe-Chr10:4185213 4.42e-66 dispersed
Hepe04g1570 Hepe-Chr4:71201897 Hepe10g0381 Hepe-Chr10:4185213 5.45e-29 dispersed
Hepe08g0974 Hepe-Chr8:9152296 Hepe10g0381 Hepe-Chr10:4185213 9.34e-34 dispersed
Hepe09g1689 Hepe-Chr9:51116144 Hepe10g0381 Hepe-Chr10:4185213 7.08e-11 dispersed
Hepe01g2218 Hepe-Chr1:86878927 Hepe10g0381 Hepe-Chr10:4185213 3.81e-94 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0381 . 83 366 C2C2-Gata Transcription Factor Family AT5G25830 53.5 3.3e-68 255.8
Hepe01g2218 . 98 332 C2C2-Gata Transcription Factor Family AT5G25830 54.8 1.2e-62 237.3
Hepe01g2218 . 98 292 C2C2-Gata Transcription Factor Family AT3G60530 51.8 2.1e-43 172.9
Hepe07g0688 . 30 294 C2C2-Gata Transcription Factor Family AT3G51080 51.8 8.3e-53 204.5
Hepe04g1570 . 99 263 C2C2-Gata Transcription Factor Family AT4G36240 52.6 1.8e-39 159.8
Hepe06g1713 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.3e-135 480.3
Hepe06g1094 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-135 477.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56449 PF00320 GATA 1.90E-15 CL0167 Hepe TF