Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0381 ATGGAAGCTCCTGAATATTTCCAAATCAATACCTACTGCTCCCAATTCGCCACCCACTCCTCCGACAACGACGCCGCCGCCGCCACCGGAGCTGAGCATTTCATCGTCGAGGAACTTCTCGATTTCTCCAACCACGACGACGGAGGAGGATTCTTCAATAATACTAACAATAATAATAATGCCACCTGCTTCCTCACTGGAAAGTCGGCCGATTCCTCCGCCGTTACGGTGGTTGAGAGCTGCAATTCCTCGTCGTTTTCCGGTTGCGAACCTAATTCCTTCTTTGCGGATTCTAATTTAGTCGAAAGCAATTTCACCAACGAACTCTGCGTTCCGTTCGACGATATAGCTGATTTGGAATGGCTTTCAAATTTAGTAGAGGAATCATTTTCCAGCGAGGATTTGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAACCCGACGAACCCCCCCAGTCCCGACAGCCCAGCACCGCCACCCACAGCCGAAACGCCGCCGCAATCTTCAAACCGGACATCGTTTCGGTTCCGGCGAAGGCACGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCTCTCTCTCCGACCACCTCCTCGTCGGAATCCGACATCGCCGTTGTCGTCACCACCGCCGGACCACCACACCCAGTCAAAAAGGTCCCTCCAAAGGTGACGACGGCGAAGAAGAAGGACTCCCCGGAGGTGGCCGGAGTGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAAACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTCTGTAACGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGACCCGCCGCCAGCCCCACATTCGTCCTCACGAAACACTCGAATTCCCACCGGAAAGTGCTGGAGCTCCGGCGGCAGAAGGAGGTTCTCAAAGCACAGCAACAGCAACCGCAACCATTGATTTTGGATCATCATCATCATCAGGATATGATCTTTGACTCATCCAACGGTGACGATTATCTCATCCATCAACATGTGGGGCCCGATTTCCGGCAGCTGATCTGA 1101 55.22 MEAPEYFQINTYCSQFATHSSDNDAAAATGAEHFIVEELLDFSNHDDGGGFFNNTNNNNNATCFLTGKSADSSAVTVVESCNSSSFSGCEPNSFFADSNLVESNFTNELCVPFDDIADLEWLSNLVEESFSSEDLQKLELISGVKVKPDEPPQSRQPSTATHSRNAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESDIAVVVTTAGPPHPVKKVPPKVTTAKKKDSPEVAGVSAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEVLKAQQQQPQPLILDHHHHQDMIFDSSNGDDYLIHQHVGPDFRQLI 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4185213 4187676 - Hsped.10g03810.1 Hepe10g0381 580928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0381 366 Pfam GATA zinc finger 254 288 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 MobiDBLite consensus disorder prediction 146 165 - -
Hepe10g0381 366 ProSitePatterns GATA-type zinc finger domain. 254 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 ProSiteProfiles GATA-type zinc finger domain profile. 248 284 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 FunFam GATA transcription factor 246 330 - -
Hepe10g0381 366 SMART GATA_3 248 298 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 250 312 - -
Hepe10g0381 366 CDD ZnF_GATA 253 300 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0381 366 PIRSF Txn_fac_GATA_plant 15 343 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Hepe10g0381 366 Gene3D - 247 329 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe10g0381 366 MobiDBLite consensus disorder prediction 220 247 - -
Hepe10g0381 366 PANTHER GATA TRANSCRIPTION FACTOR 33 320 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1433 Hepe-Chr2:18234531 Hepe10g0381 Hepe-Chr10:4185213 8.37e-74 dispersed
Hepe03g1519 Hepe-Chr3:72079978 Hepe10g0381 Hepe-Chr10:4185213 4.42e-66 dispersed
Hepe04g1570 Hepe-Chr4:71201897 Hepe10g0381 Hepe-Chr10:4185213 5.45e-29 dispersed
Hepe08g0974 Hepe-Chr8:9152296 Hepe10g0381 Hepe-Chr10:4185213 9.34e-34 dispersed
Hepe09g1689 Hepe-Chr9:51116144 Hepe10g0381 Hepe-Chr10:4185213 7.08e-11 dispersed
Hepe01g2218 Hepe-Chr1:86878927 Hepe10g0381 Hepe-Chr10:4185213 3.81e-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56449 PF00320 GATA 1.90E-15 CL0167 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0381 - - - 0.0