Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0399 ATGGTGATGCCCGACTCGTCTGAGTTCCACCGGACCGCGTCTCGTCGACCCAATCGACCGCTAATCGGAGCTAGGGTTCCGCTAAGACGGTTACTCCGCGTGGCATCCGTTGCATGCGGAATTCAGTTCGGTTGGGCTTTGCAGCTCTCTCTTCTGACTCCTTATATTCAAGAGCTCGGTATTCCTCATGCTTGGTCTAGTCTCATATGGCTCTGCGGACCTCTTTCCGGCCTCTTCGTCCAGCCCCTGGTTGGCCACATGAGCGATCGCTGCACCAGCCGCTACGGCCGCCGGAGACCGTTCATCGTCGCTGGAGCGCTTTCCATTGTCCTCGCCGTTTTGATCATCGGTCACTCGGCCGACCTCGGTTGGTTGATTGGTGATAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGTTTTTGGATTCTCGACGTTGCTAACAATTTCACCCAGGGTCCTTGTCGAGCTCTGCTAGCTGATCTTACTGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATGGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCTTACCGCTGCATGTTCTGTAAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATCACAACATATTTTAGTGTATCATCAGTTCAAGAGTTACCTCTAGTTTCAAGTGACAGGTCCTCCCTGGTTGTAGAAGAAGGTATGGGGCAGTCAAGTCATGATTCAGAAGCTTTCCTCTGGGAGTTGTTTCGGACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCGTTCATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAATTCTGGAGTCAGAATGGGAGCATTCGGTCTGATGTTAAACTCTGTTGTCCTTGGAGTAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCGTATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTTCTTACTATCCTGGTTATTACATATGTAGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAATTAGTATTGTATCAGCTGCATTGATTACCTTTGCTCTTCTTGGTGCCCCCTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGTGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTAGTGCTCAGAGGCCCAGAACCCTCACATGA 1512 46.96 MVMPDSSEFHRTASRRPNRPLIGARVPLRRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNFTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNVFGYATGSFSGWYKILPFTLTAACSVNCANLKSAFLIDIVFIAITTYFSVSSVQELPLVSSDRSSLVVEEGMGQSSHDSEAFLWELFRTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQSYNSGVRMGAFGLMLNSVVLGVTSLLMEKLCRKWGAGFVWGISNIFMALCFLTILVITYVANNMGYIGHDLPPISIVSAALITFALLGAPLAITYSVPYAMISSRVESLQLGQGLSVGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSSAQRPRTLT 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4392310 4398397 + Hsped.10g03990.1 Hepe10g0399 580946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0399 503 SUPERFAMILY MFS general substrate transporter 29 494 IPR036259 -
Hepe10g0399 503 NCBIfam sucrose/proton symporter 26 495 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Hepe10g0399 503 CDD MFS_SLC45_SUC 31 489 - -
Hepe10g0399 503 Gene3D MFS general substrate transporter like domains 28 491 IPR036259 -
Hepe10g0399 503 FunFam Sucrose transport protein 25 491 - -
Hepe10g0399 503 Pfam MFS/sugar transport protein 43 185 - -
Hepe10g0399 503 PANTHER SUGAR TRANSPORTER 25 489 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1720 Hepe-Chr8:30233147 Hepe10g0399 Hepe-Chr10:4392310 7.02e-170 dispersed
Hepe08g1860 Hepe-Chr8:47198077 Hepe10g0399 Hepe-Chr10:4392310 4.72e-153 dispersed
Hepe10g0399 Hepe-Chr10:4392310 Hepe08g1685 Hepe-Chr8:26899017 2.86e-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0399 K15378 - csv:101220384 892.108