Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0399 ATGGTGATGCCCGACTCGTCTGAGTTCCACCGGACCGCGTCTCGTCGACCCAATCGACCGCTAATCGGAGCTAGGGTTCCGCTAAGACGGTTACTCCGCGTGGCATCCGTTGCATGCGGAATTCAGTTCGGTTGGGCTTTGCAGCTCTCTCTTCTGACTCCTTATATTCAAGAGCTCGGTATTCCTCATGCTTGGTCTAGTCTCATATGGCTCTGCGGACCTCTTTCCGGCCTCTTCGTCCAGCCCCTGGTTGGCCACATGAGCGATCGCTGCACCAGCCGCTACGGCCGCCGGAGACCGTTCATCGTCGCTGGAGCGCTTTCCATTGTCCTCGCCGTTTTGATCATCGGTCACTCGGCCGACCTCGGTTGGTTGATTGGTGATAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGTTTTTGGATTCTCGACGTTGCTAACAATTTCACCCAGGGTCCTTGTCGAGCTCTGCTAGCTGATCTTACTGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATGGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCTTACCGCTGCATGTTCTGTAAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATCACAACATATTTTAGTGTATCATCAGTTCAAGAGTTACCTCTAGTTTCAAGTGACAGGTCCTCCCTGGTTGTAGAAGAAGGTATGGGGCAGTCAAGTCATGATTCAGAAGCTTTCCTCTGGGAGTTGTTTCGGACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTTCCGTTCATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAATTCTGGAGTCAGAATGGGAGCATTCGGTCTGATGTTAAACTCTGTTGTCCTTGGAGTAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCGTATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTTCTTACTATCCTGGTTATTACATATGTAGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAATTAGTATTGTATCAGCTGCATTGATTACCTTTGCTCTTCTTGGTGCCCCCTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGTGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTAGTGCTCAGAGGCCCAGAACCCTCACATGA 1512 46.96 MVMPDSSEFHRTASRRPNRPLIGARVPLRRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNFTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNVFGYATGSFSGWYKILPFTLTAACSVNCANLKSAFLIDIVFIAITTYFSVSSVQELPLVSSDRSSLVVEEGMGQSSHDSEAFLWELFRTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQSYNSGVRMGAFGLMLNSVVLGVTSLLMEKLCRKWGAGFVWGISNIFMALCFLTILVITYVANNMGYIGHDLPPISIVSAALITFALLGAPLAITYSVPYAMISSRVESLQLGQGLSVGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSSAQRPRTLT 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4392310 4398397 + Hsped.10g03990.1 Hepe10g0399 580946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0399 503 SUPERFAMILY MFS general substrate transporter 29 494 IPR036259 -
Hepe10g0399 503 NCBIfam sucrose/proton symporter 26 495 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Hepe10g0399 503 CDD MFS_SLC45_SUC 31 489 - -
Hepe10g0399 503 Gene3D MFS general substrate transporter like domains 28 491 IPR036259 -
Hepe10g0399 503 FunFam Sucrose transport protein 25 491 - -
Hepe10g0399 503 Pfam MFS/sugar transport protein 43 185 - -
Hepe10g0399 503 PANTHER SUGAR TRANSPORTER 25 489 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0399 K15378 - - csv:101220384 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1720 Hepe-Chr8:30233147 Hepe10g0399 Hepe-Chr10:4392310 7.02e-170 dispersed
Hepe08g1860 Hepe-Chr8:47198077 Hepe10g0399 Hepe-Chr10:4392310 4.72e-153 dispersed
Hepe10g0399 Hepe-Chr10:4392310 Hepe08g1685 Hepe-Chr8:26899017 2.86e-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G22710 62.3 1.4e-177 619.8
Hepe10g0399 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.2 5.0e-140 495.0
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT2G14670 62.1 2.8e-172 602.1
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.8 7.2e-136 481.1
Hepe08g1720 . 23 413 Sucrose Transporter Gene Family AT1G66570 59.9 3.0e-144 508.8
Hepe10g0399 . 27 420 Sucrose Transporter Gene Family AT1G66570 51.1 1.8e-112 403.3
Hepe08g1685 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.0e-183 639.0
Hepe08g1860 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.6e-183 638.6
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G06170 60.6 2.4e-163 572.4
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 1.3e-129 460.3
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G43610 61.7 4.5e-170 594.7
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G43610 51.4 9.8e-133 470.7
Hepe10g0399 . 1 499 Sucrose Transporter Gene Family AT1G09960 69.1 6.9e-206 713.8
Hepe08g1720 . 8 493 Sucrose Transporter Gene Family AT1G09960 51.8 8.9e-137 484.2
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71880 59.4 5.2e-169 591.3
Hepe10g0399 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.6 2.4e-134 476.1
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71890 59.0 1.8e-166 582.8
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71880 59.4 5.2e-169 591.3
Hepe10g0399 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.6 2.4e-134 476.1
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G22710 62.3 1.4e-177 619.8
Hepe10g0399 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.2 5.0e-140 495.0
Hepe08g1685 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.0e-183 639.0
Hepe08g1860 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.6e-183 638.6
Hepe10g0399 . 1 499 Sucrose Transporter Gene Family AT1G09960 69.1 6.9e-206 713.8
Hepe08g1720 . 8 493 Sucrose Transporter Gene Family AT1G09960 51.8 8.9e-137 484.2
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71890 59.0 1.8e-166 582.8
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G43610 61.7 4.5e-170 594.7
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G43610 51.4 9.8e-133 470.7
Hepe08g1720 . 23 413 Sucrose Transporter Gene Family AT1G66570 59.9 3.0e-144 508.8
Hepe10g0399 . 27 420 Sucrose Transporter Gene Family AT1G66570 51.1 1.8e-112 403.3
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT2G14670 62.1 2.8e-172 602.1
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.8 7.2e-136 481.1
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G06170 60.6 2.4e-163 572.4
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 1.3e-129 460.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30