Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0401 ATGGCTGTTTCAACCAGTTTTTCCGGTGCCAAATTGGAAGCCCTTTTGTTGAAATCGGCGGCAACTTCCTCCACGACGAGGGGTTCCTCTTCTTCTTCTCAGCTTCCCGTTTTCTCCAAATCCATTCGGAGCAGAAAAGTTCAATTTCAGAGATGTGGGTTTTCTTCTTTGAGCCCTTTCAAGTGCGAGGTTGCTTCTTCTGATGTTTTGGTTCAGAATGATGAAATTGATCTAGCTAAATCTCCCAATCTCTCTGCGCTTGAACAGCTCAAGACCTCTGCTGCTGACAGATATACAAAGGAAAGAAGCAGCATTGTTGTGATTGGGCTTAGTATTCATACAACACCTGTTGAAATGAGAGAAAAACTGGCCATTCCTGAGGCAGAGTGGCCTCGAGCCATAGGAGAGCTTTGTGGCTTAAACCACATAGAAGAAGCAGCTGTTCTTAGCACCTGCAACAGAATGGAGATATATGTTGTTGCTCTATCTCAGCATCGTGGAGTGAAAGAAGTGACTGAATGGATGTCCAAGACAAGTGGAATCCCGGTTTCGGAGATTTGCCAGCACCGGTTTTTGCTGTATAACAACGATGCTACACAACATATTTTCGAAGTTTCAGCAGGCCTTGACTCTCTTGTCCTAGGAGAAGGCCAAATCCTTGCTCAGGTTAAACAAGTTGTCAAAGTTGGCCAGGGTGTTGCAGGGTTTGGAAGGAACATTAGTGGGCTTTTCAAGCACGCGATCACGGTGGGTAAGCGGGTAAGGACAGAGACTAATATTGCCGCTGGAGCTGTTTCTGTGAGTTCTGCTGCTGTAGAATTGGCCTTGATGAAGCTTCCTGAAGCTTCACATGCCACTGCCAGAATGCTGGTGATTGGAGCTGGAAAGATGGGAAAGCTTGTAATTAAACATTTGGTAGCTAAAGGCTGCACAAAGATGGTTGTTGTGAATCGATCTGAAGAGAGAGTCACAGCCATTCGCGAGGAGATCAAGGATGTCGAGATAATCTATAAGCCCCTCACAGAAATGCTTAGTAGTGCAGCGGAAGCTGACGTGATATTTACCAGCACAGCTTCTGAAAGCCTTTTGTTTACAAAGGAGCAGGTTAAGGATCTCCCCCCTGTTGGGCATGAAGTTGGGGGCTCAAGGCTTTTCATTGATATCTCTGTTCCTCGAAATGTCGGAGCATGCATCAATGATCTAGAAGATGTACGAGTTTACAATGTCGACGACCTTAAGGAGGTAGTTGCTGCAAATAAGGAGGATCGGCTCCGAAAAGCGATGGAAGCACAATCAATTATCACTGAAGAATCCAAACAATTTGAAGCGTGGAGGGACTCATTGGAGACTGTTCCAACGATCAAGAAACTGAGGGCTTATGCCGAAAGAATCAGAACTGCAGAGTTAGAAAAATGTCTATCAAAGATGGGTGATGATATCTCAAAGAAAACTCGACGAGCTGTGGACGATCTCAGTCGAGGTATAGTTAACAAGCTGCTTCATGGTCCAATGCAGCATTTGAGATGCGACGGGAGCGATAGCAGGACATTGAGCGAGACCTTGGAGAATATGCACGCTCTAAATAGAATGTTCAGCCTCGAGACAGAGATAGCGGTGTTGGAACAGAAGATCAGAGCTAAAGTGGAACAAAACCAGAAGTAA 1662 45.49 MAVSTSFSGAKLEALLLKSAATSSTTRGSSSSSQLPVFSKSIRSRKVQFQRCGFSSLSPFKCEVASSDVLVQNDEIDLAKSPNLSALEQLKTSAADRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVAGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVTAIREEIKDVEIIYKPLTEMLSSAAEADVIFTSTASESLLFTKEQVKDLPPVGHEVGGSRLFIDISVPRNVGACINDLEDVRVYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQFEAWRDSLETVPTIKKLRAYAERIRTAELEKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4434005 4436990 + Hsped.10g04010.1 Hepe10g0401 580948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0401 553 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 427 513 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Hepe10g0401 553 Coils Coil 316 336 - -
Hepe10g0401 553 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 24 550 - -
Hepe10g0401 553 CDD NAD_bind_Glutamyl_tRNA_reduct 105 427 - -
Hepe10g0401 553 Gene3D - 264 416 - -
Hepe10g0401 553 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 104 260 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Hepe10g0401 553 FunFam Glutamyl-tRNA reductase 104 263 - -
Hepe10g0401 553 Pfam Shikimate / quinate 5-dehydrogenase 274 415 IPR006151 -
Hepe10g0401 553 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 263 423 IPR036291 -
Hepe10g0401 553 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 108 258 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Hepe10g0401 553 FunFam Glutamyl-tRNA reductase 263 422 - -
Hepe10g0401 553 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 429 533 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Hepe10g0401 553 Gene3D - 103 263 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Hepe10g0401 553 Coils Coil 530 550 - -
Hepe10g0401 553 Hamap Glutamyl-tRNA reductase [hemA]. 104 531 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Hepe10g0401 553 ProSitePatterns Glutamyl-tRNA reductase signature. 201 224 IPR018214 GO:0008883(InterPro)
Hepe10g0401 553 NCBIfam glutamyl-tRNA reductase 105 513 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0401 K02492 - - csv:101220615 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0401 Hepe-Chr10:4434005 Hepe02g0688 Hepe-Chr2:7572278 5.08e-255 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g563 . . Bda01g00924 . . . . . Cmo05g00593 . . . . . Sed04g0235 . . Bhi04g00899 Tan02g2513 Cmetu03g1732 . Hepe10g0401 . Lcy13g1452 Cla08g01187 Cam08g1652 Cec08g1228 Cco08g1347 Clacu08g1348 . Cre08g1134 Cone4ag1273 . Cone17ag1156 Cone20ag0573 . . . Cme03g01777 Blo17g00084 Blo18g00094 . Bda13g01345 Bpe02g01169 Bpe14g00500 Bma01g01362 Bma02g00099 . . . . Cma05g00567 Car05g00511 . Cpe11g00496 . . . . . . . . . . . . . . . Lsi08g01050 Csa02g02234 Chy03g01283 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007166 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 37