Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0403 ATGTCTTCATCACTACCTGATGTTGGGGAGGGGGAGGAAAGTCGAAGCAATGTCACTCTGTTGGCTTCCTCAAACTCTATGGAGAGTGTCAGTCAAAACAATTTGGGATTTGAAGAGCGGAATTATATGGGATTATCTGATTCTTCTTCAGAGGACAGTTGTATGACTGCCACAAAGCCTGATGGGAACAAACCCTCGCTGAATCTCAAAGCTACAGAATTGAGGCTAGGCCTCCCTGGATCTGAATCCCCAAAGAGAGATGCAGATATCAGCTTGCGTGGCTCGTCTCAATTTGACGAAAAACCACTATTTCCTTTGCACCCATCAGATGGTCACTACTCTTCACCACATAAAGCTGTTGTCTCAGGCAACAAAAGGGGTTTTTCAGATGCCATGAACGAATTCTCAGAGGGAAAATATCACGCTAACCTAGGTTTGAAAGCTGGTTCTTTGCTAGAGAACCTTGGAAGTCAGATGGGGAAAGTGAAAGAGGCATCTACACAAAAGGTTGTACAAGAGAGGCCTCAAGAAAATAGTGAAACCAGGCCATCTCATAATGAGACTGCAAATAACAATACCAGCGCACCCGTTTCCAAGGCACAAGTTGTGGGTTGGCCACCCATAAGATCTTTTAGGAAGAACACATTGGCTACAACTTCAAAGAACAATGATGAAGTTGATGGAAAGGCAATGCCTGGTGCACTCTTTGTCAAAGTCAGCATGGATGGTGCTCCTTATCTGAGGAAGGTAGATCTGAGGAACTACTCTGTATACCAGGAGCTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACTATAGGTGTGTTATTTGCAACTTTCTATTGGATTGAAAAATCTGTCGCGTGA 870 44.25 MSSSLPDVGEGEESRSNVTLLASSNSMESVSQNNLGFEERNYMGLSDSSSEDSCMTATKPDGNKPSLNLKATELRLGLPGSESPKRDADISLRGSSQFDEKPLFPLHPSDGHYSSPHKAVVSGNKRGFSDAMNEFSEGKYHANLGLKAGSLLENLGSQMGKVKEASTQKVVQERPQENSETRPSHNETANNNTSAPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVDGKAMPGALFVKVSMDGAPYLRKVDLRNYSVYQELSSALEKMFSCFTIGVLFATFYWIEKSVA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4474657 4478935 - Hsped.10g04030.1 Hepe10g0403 580950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0403 289 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 68 274 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe10g0403 289 Gene3D - 229 281 - -
Hepe10g0403 289 ProSiteProfiles PB1 domain profile. 234 289 IPR053793 -
Hepe10g0403 289 MobiDBLite consensus disorder prediction 1 65 - -
Hepe10g0403 289 MobiDBLite consensus disorder prediction 159 199 - -
Hepe10g0403 289 MobiDBLite consensus disorder prediction 182 199 - -
Hepe10g0403 289 MobiDBLite consensus disorder prediction 167 181 - -
Hepe10g0403 289 MobiDBLite consensus disorder prediction 1 67 - -
Hepe10g0403 289 Pfam AUX/IAA family 71 276 IPR033389 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0403 K14484 - - csv:101221088 485.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g1492 Hepe-Chr9:35491092 Hepe10g0403 Hepe-Chr10:4474657 9.16e-21 dispersed
Hepe10g0403 Hepe-Chr10:4474657 Hepe04g1374 Hepe-Chr4:69405152 9.01e-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56450 PF02309 AUX_IAA 4.40E-47 CL0072 Hepe TR