Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0404 ATGCCGTCCAGATTCTTGGGCAGAACCGCCATTAGAGAGCAAGAGAGAGAAATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTGATGGCTCTACGAAGAGAAGCAAACTGGGACGCCATTCCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGATCAAAACACAGCCAATTTCCACCCAAATTCTTCATCGGAGCCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTGTCAAATGAGTTCTCAGTTCCACAAATGGACGATTCTGCGTATGCCGTCATGGAAGTAGCCGCGCCCGTGTCATTTGAAGCAGAGCGTCCGAATGTGAAGCAGCGAGAAGAAGAGGAAGAGGAATTAGGTTTTCTCGCGGATGAGATTCGGAATACGGAGGTTGTTCAAGTTCAAGTTCAATCGTCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCCCGATTTTCAACATCGGAACATGCTCTCTGGAAAGAAAGAACAACAGACCGAAGAAATTACAAGGCCAACCGTCGAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTTCCTAAGATCAGCAAGATGGATCGAACTGCGATTTTGGCAGATTCAATTGATTACATGAAGGAATTGCTGGAGAAGATCGGGAATCTGCAAAGAGAAGTGGATCGATCGAATCAGACGACGAATTCATTGAACGAAACGAAACCGAGCGAATTCGTAGTGAGAAATTCACCAAAATTTGAGGTGGAAAGTAGAAACGGAAGCACGAAGATCGAGATTTGCTGTGCGGCGAAGCCAGGATTGTTGTTATCGACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTGAGGAACTGAAGCAGATAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTGTTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1056 46.12 MPSRFLGRTAIREQEREMELDEHVFLEELMALRREANWDAIPTEITDLCSNAWAFDYCFDQNTANFHPNSSSEPLSAQNLDEFYHPLSNEFSVPQMDDSAYAVMEVAAPVSFEAERPNVKQREEEEEELGFLADEIRNTEVVQVQVQSSCKMEPNQSPELPIFNIGTCSLERKNNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADSIDYMKELLEKIGNLQREVDRSNQTTNSLNETKPSEFVVRNSPKFEVESRNGSTKIEICCAAKPGLLLSTVNTIEALGLEIQQCVISCFNDFALQATCSEELKQITELKPEELKEALFRNAGYGGSCL 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4507374 4511023 - Hsped.10g04040.1 Hepe10g0404 580951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0404 351 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 147 346 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe10g0404 351 Gene3D - 173 248 IPR036638 GO:0046983(InterPro)
Hepe10g0404 351 CDD ACT_UUR-ACR-like 277 340 - -
Hepe10g0404 351 Pfam Helix-loop-helix DNA-binding domain 189 231 IPR011598 GO:0046983(InterPro)
Hepe10g0404 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983(InterPro)
Hepe10g0404 351 Coils Coil 228 248 - -
Hepe10g0404 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 249 IPR036638 GO:0046983(InterPro)
Hepe10g0404 351 Coils Coil 122 142 - -
Hepe10g0404 351 SMART finulus 188 237 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0452 Hepe-Chr9:4087830 Hepe10g0404 Hepe-Chr10:4507374 6.24e-11 dispersed
Hepe10g0404 Hepe-Chr10:4507374 Hepe10g1639 Hepe-Chr10:53096347 2.77e-14 dispersed
Hepe02g1651 Hepe-Chr2:22340527 Hepe10g0404 Hepe-Chr10:4507374 4.37e-40 transposed
Hepe07g2082 Hepe-Chr7:65083710 Hepe10g0404 Hepe-Chr10:4507374 6.53e-38 transposed
Hepe01g2191 Hepe-Chr1:86605085 Hepe10g0404 Hepe-Chr10:4507374 5.99e-97 wgd
Hepe10g0404 Hepe-Chr10:4507374 Hepe04g1377 Hepe-Chr4:69436800 3.23e-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56451 PF00010 HLH 6.00E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0404 - - - 0.0