Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0407 ATGAAGGGAAAACGGGTCGACCCGACCCGCAACACCTCACTTATAAAACATACTGAAGCAGATATGCGCAAGTGTAGGGATATAATTGAAAGATATTCCAAGTTGAAGTTGAAGGAGCACCAAAAAGAGCCTGAGGCCTCCATCACCAATCTACTAACCCCACTGCGCACTGCTGACAAAGGAAGAACACCAAATCAAAAGGGCGCGGAATCTCATTTCCATATCGGAGGAGGCAAAATCAACCGACGGAAACCAATGGCTATGGCTCTTCGAAGAATCGCCGTCGGCATTAGGAAACCCATCGTTCCTCTCGTCAATGGCCGGTTCCTCCATCACATGTCTTCTCTCTCCGCGGCCGCTACGGAGGAAAGGGAAAAGGCTCGAGCTACTTGGATTAAGCAGCTGAACGCCCCCCTTGAGGTCATTGATCCGGAGATTGCAGATATCATTGAGCTTGAGAAAGCTCGTCAATGGAAGGGGTTTGAACTTATACCTTCTGAGAATTTCACTTCATCATCAGTGATGGAAGCAGTTGGTTCAGTTATGACCAACAAATATAGTGAAGGATATCCTGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCCGAATCCTTGTGCCAGAAACGTGCACTAGAAGCTTTTCGTTTGGACCCTGCAAAATGGGGAGTTAACGTGCAGTCTCTCTCTGGATCACCGGCTAACTTTCAGGCATATACTGCATTATTAAAACCCCATGAGAGGATTATGGCTCTTGATTTACCACATGGTGGACACCTTTCGCATGGTTATCAGACTGATACCAAGAAGATTTCTGCTGTTTCAATATTCTTCGAGACAATGCCATATAGGTTGGATGAGAGCACTGGTTACATTGACTATGACCAGTTGGAGAGAAGTGCAGCGTTGTTCCGACCAAAACTCATTGTTGCTGGTGCAAGTGCCTATGCCCGTCTCTATGACTATGCACGAATTCGCAAGGTCTGTGACAAACAGAAGGCAGTCATGTTGGCTGATATGGCACACATTAGTGGTTTAGTTGCAGCAGACGTTATTCCATCTCCTTTCGAATATGCTGATATTGTGACAACAACCACACACAAGTCCTTACGTGGACCACGAGGGGCGATGATTTTCTTCCGGAAGGGCGTTAAAGAGATCAACAAAAAAGGACAGGAAGTGCTCTATGACTATGAAGACAAAATTAATCAGGCTGTCTTTCCTGGTCTTCAAGGTGGCCCACACAACCACACCATATCTGGTCTGGCAGTTGCACTAAAGCAGGCCACAACTCCGGAATACAAAGCCTACCAAGAGCAGGTTCTCAGTAATTGTTCAAAATTTGCTCAGAGTTTGATTGAGAAGGGCTATGAACTTGTGTCTGGTGGAACTGACAACCATTTAGTCCTCGTGAATTTGAAAAATAAGGGTATTGATGGGTCAAGAGTCGAGAAGGTTTTGGAATCAGTTCATATTGCGGCTAACAAGAACACAGTTCCAGGGGACGTGTCTGCCATGGTTCCTGGTGGCATCCGTATGGGGACCCCTGCTCTGACTTCGAGAGGTTTCCTCGAAGCAGATTTTGTGAAAGTAGCTGAAGTCTTTGATGAAGCTGTGAAGCTGGCCTTGAAGATTAAGGCTGATAGCGAAGGTACTAAGTTGAAGGATTTCGTGGCAACCATGCAATCGAATAAAGGTTTCCAATCTGAAATTTCAAAGCTCCGACATCAGGTTGAGGAGTATGCCAAGCAATTTCCAACAATAGGTTTTGAGAAAGAGACAATGAGATACAGAAACTGA 1806 45.57 MKGKRVDPTRNTSLIKHTEADMRKCRDIIERYSKLKLKEHQKEPEASITNLLTPLRTADKGRTPNQKGAESHFHIGGGKINRRKPMAMALRRIAVGIRKPIVPLVNGRFLHHMSSLSAAATEEREKARATWIKQLNAPLEVIDPEIADIIELEKARQWKGFELIPSENFTSSSVMEAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQAYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLERSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAADVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVLYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQATTPEYKAYQEQVLSNCSKFAQSLIEKGYELVSGGTDNHLVLVNLKNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEADFVKVAEVFDEAVKLALKIKADSEGTKLKDFVATMQSNKGFQSEISKLRHQVEEYAKQFPTIGFEKETMRYRN 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4549691 4557805 - Hsped.10g04070.1 Hepe10g0407 580954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0407 601 FunFam Serine hydroxymethyltransferase 168 441 - -
Hepe10g0407 601 Gene3D - 168 441 IPR015421 -
Hepe10g0407 601 Gene3D Aspartate Aminotransferase, domain 1 143 588 IPR015422 -
Hepe10g0407 601 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 362 378 IPR019798 GO:0030170(InterPro)
Hepe10g0407 601 SUPERFAMILY PLP-dependent transferases 131 592 IPR015424 -
Hepe10g0407 601 Hamap Serine hydroxymethyltransferase [glyA]. 138 591 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Hepe10g0407 601 MobiDBLite consensus disorder prediction 57 78 - -
Hepe10g0407 601 FunFam Serine hydroxymethyltransferase 429 589 - -
Hepe10g0407 601 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 120 594 IPR049943 GO:0004372(PANTHER)|GO:0005737(PANTHER)|GO:0006565(PANTHER)|GO:0006730(PANTHER)|GO:0008270(PANTHER)|GO:0019264(PANTHER)|GO:0030170(PANTHER)|GO:0046653(PANTHER)|GO:0046655(PANTHER)|GO:0050897(PANTHER)|GO:0070905(PANTHER)
Hepe10g0407 601 Pfam Serine hydroxymethyltransferase 140 536 IPR039429 -
Hepe10g0407 601 Coils Coil 566 586 - -
Hepe10g0407 601 CDD SHMT 143 563 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0407 K00600 - - csv:101222345 984.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2251 Hepe-Chr1:87160329 Hepe10g0407 Hepe-Chr10:4549691 5.40e-164 transposed
Hepe03g0374 Hepe-Chr3:5329410 Hepe10g0407 Hepe-Chr10:4549691 1.79e-159 transposed
Hepe07g0506 Hepe-Chr7:5367898 Hepe10g0407 Hepe-Chr10:4549691 1.23e-163 transposed
Hepe07g0889 Hepe-Chr7:11458684 Hepe10g0407 Hepe-Chr10:4549691 5.53e-201 transposed
Hepe09g0926 Hepe-Chr9:9331819 Hepe10g0407 Hepe-Chr10:4549691 4.20e-156 transposed
Hepe10g0407 Hepe-Chr10:4549691 Hepe04g1383 Hepe-Chr4:69481572 0.0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g58 . . . . . . . . . . . . . . Sed07g1476 Cpe07g00154 . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00180 . . . . . . . . . . . Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . Csa02g02227 . .
Vvi18g553 Blo01g01790 . . . . . . . . . . . . . Sed07g1476 . . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . . . . . . . Cme03g01782 . Blo18g00098 . . . . Bma01g01367 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01041 Csa02g02227 Chy03g01290 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195