Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0420 ATGAAAGGAGATTTTGGTCATCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTTGCCCACCCCTTTACTCACCCTCCTCCGCCCCATCATCCCGACCAAGATTCCACCGCCGCCCTACCTCCGCCCTTCAAACATTTTTCTGACGGCTCAACGATCGAGGTGGTCCGTCGCCCGAGAGGTCGCCCACCGGGCTCCAAGAATAAACCCAAACCGCCACTCGTCATAACCCGAGAACCCGAACCGGCTATGCGGCCGTACGTTCTTGAAGTACCTGGTGGAAACGACGTCGTTGAAGCTATTTTAAGATTCTGCCGTCGCAAGAATATGGGTCTTTGTATTCTCAACGCCTCCGGCACCGTCGCGAATGTTTCTCTCCGGCAACCGTCGTCCACTCCCGGCGCTACCCTTACCTTTCACGGCCGTTTTGAGATCCTATCCATTTCTGCCACCGTGTTCCCTCAAACGTCGCCGTTACCCCTCCCCAACGCCTTCACTATCTCCCTCGCCGGACCTCAGGGCCAAATCGTCGGTGGCTTGGTCGCCGGCGCTTTAATCTCCGCCGGTACCGTTTTCGTCGTCGCCTCGTCGTTCAATAATCCCTTGTACCACCGCCTCCCCGATGAGGATGAGATTAAGAATTTGGGCTCCGGTGGAGGCGGCGGCGGTGAAGTTCACTCCCCACATGTCTCCGGCGGCGGAGATAGTAGCGGACACGGGCAGGGGCACGGGCAGCCACTTGCGGAATCGTGTGGAATGGCTATGTACAGTTGCCACGCGCCGTCCGACGTAATATGGGCGCCGACGGCGAGGCAACCGCCGCCGTACTAA 837 57.59 MKGDFGHPKSKTSNMLSKFHLAHPFTHPPPPHHPDQDSTAALPPPFKHFSDGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAILRFCRRKNMGLCILNASGTVANVSLRQPSSTPGATLTFHGRFEILSISATVFPQTSPLPLPNAFTISLAGPQGQIVGGLVAGALISAGTVFVVASSFNNPLYHRLPDEDEIKNLGSGGGGGGEVHSPHVSGGGDSSGHGQGHGQPLAESCGMAMYSCHAPSDVIWAPTARQPPPY 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4705638 4707331 - Hsped.10g04200.1 Hepe10g0420 580967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0420 278 Gene3D - 86 217 - -
Hepe10g0420 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 212 - -
Hepe10g0420 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 247 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe10g0420 278 MobiDBLite consensus disorder prediction 1 79 - -
Hepe10g0420 278 CDD DUF296 87 200 IPR005175 -
Hepe10g0420 278 MobiDBLite consensus disorder prediction 215 248 - -
Hepe10g0420 278 FunFam AT-hook motif nuclear-localized protein 87 219 - -
Hepe10g0420 278 MobiDBLite consensus disorder prediction 24 38 - -
Hepe10g0420 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 201 IPR005175 -
Hepe10g0420 278 ProSiteProfiles PPC domain profile profile. 83 221 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2445 Hepe-Chr8:65405116 Hepe10g0420 Hepe-Chr10:4705638 8.90e-34 dispersed
Hepe08g2448 Hepe-Chr8:65462238 Hepe10g0420 Hepe-Chr10:4705638 8.15e-16 dispersed
Hepe09g1166 Hepe-Chr9:14005625 Hepe10g0420 Hepe-Chr10:4705638 1.14e-41 transposed
Hepe01g2167 Hepe-Chr1:86318728 Hepe10g0420 Hepe-Chr10:4705638 9.33e-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0420 - - - 0.0