Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0423 | ATGGCGAGGGAGAAGATCAAGATAAAGAAAATCGATAACCTAACGGCGAGGCAGGTGACGTTCTCGAAGCGGCGGAGGGGGCTTTTCAAGAAGGCGGAGGAGCTGTCGGTGCTCTGCGACGCCGAGGTGGCACTGCTCGTCTTCTCCGCCACCGGCAAGCTCTTTGACTTTTCCGGTTCAAGCGTTAAGGATGTTGTTGCGAGATACAATTTGCATTCTAGTAACCTTGGAAAGTTGGAATATCCATCCCTCGAGCTACAGCTTGAGAATAGCAATCACGTCCGATTGAGCAAGGAAGTTGCAGATAAGAGCCACCAATTAAGGCAGATGAGAGGAGAGGATCTTCAAGAATTGAACTTAGAAGATTTAAAGCAATTAGAAAGAGTGCTTGAAGTAGGCCTCGCTCGAGTTCTTCAAACCAAGGAAACGAAGATTATGAGTGAAATTGATGCGCTTGAGCTTAAGGGAGCGAGGCTGATAGAAGAGAACAAGATGCTTAAACAGCAGATGTTAAGGATGTGGAATGAAAGAAGGCCAGTGGTTGTGGATTCTGACGTTGTAGTGGCGGAAGAAGGAGTTTCGTCGGAATCCGCCGCCAACGTCTGCAGCTGCAACAGCGGCCCTCCCGCCGACGATGACAGCTCCGACACCTCTCTCAAATTAGGGCTTTCTTGCCCATATTGA | 684 | 49.12 | MAREKIKIKKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFDFSGSSVKDVVARYNLHSSNLGKLEYPSLELQLENSNHVRLSKEVADKSHQLRQMRGEDLQELNLEDLKQLERVLEVGLARVLQTKETKIMSEIDALELKGARLIEENKMLKQQMLRMWNERRPVVVDSDVVVAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGLSCPY | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4743159 | 4750282 | + | Hsped.10g04230.1 | Hepe10g0423 | 580970 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0423 | 227 | ProSiteProfiles | K-box domain profile. | 86 | 180 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Hepe10g0423 | 227 | MobiDBLite | consensus disorder prediction | 198 | 218 | - | - | |
Hepe10g0423 | 227 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Hepe10g0423 | 227 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 194 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe10g0423 | 227 | Pfam | K-box region | 90 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Hepe10g0423 | 227 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | Coils | Coil | 149 | 169 | - | - | |
Hepe10g0423 | 227 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0423 | 227 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
Hepe10g0423 | 227 | Gene3D | - | 13 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g0720 | Hepe-Chr2:7912234 | Hepe10g0423 | Hepe-Chr10:4743159 | 7.48e-54 | dispersed | |
Hepe07g0362 | Hepe-Chr7:3674099 | Hepe10g0423 | Hepe-Chr10:4743159 | 4.10e-53 | dispersed | |
Hepe07g2502 | Hepe-Chr7:69351187 | Hepe10g0423 | Hepe-Chr10:4743159 | 1.77e-15 | dispersed | |
Hepe10g0423 | Hepe-Chr10:4743159 | Hepe10g0567 | Hepe-Chr10:6769448 | 4.93e-27 | dispersed | |
Hepe01g2184 | Hepe-Chr1:86516586 | Hepe10g0423 | Hepe-Chr10:4743159 | 1.37e-30 | wgd | |
Hepe10g0423 | Hepe-Chr10:4743159 | Hepe04g1384 | Hepe-Chr4:69499031 | 1.11e-29 | wgd | |
Hepe10g0423 | Hepe-Chr10:4743159 | Hepe04g1400 | Hepe-Chr4:69624078 | 2.37e-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56453 | PF01486 | K-box | 2.50E-13 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0423 | - | - | - | 0.0 |