Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0423 ATGGCGAGGGAGAAGATCAAGATAAAGAAAATCGATAACCTAACGGCGAGGCAGGTGACGTTCTCGAAGCGGCGGAGGGGGCTTTTCAAGAAGGCGGAGGAGCTGTCGGTGCTCTGCGACGCCGAGGTGGCACTGCTCGTCTTCTCCGCCACCGGCAAGCTCTTTGACTTTTCCGGTTCAAGCGTTAAGGATGTTGTTGCGAGATACAATTTGCATTCTAGTAACCTTGGAAAGTTGGAATATCCATCCCTCGAGCTACAGCTTGAGAATAGCAATCACGTCCGATTGAGCAAGGAAGTTGCAGATAAGAGCCACCAATTAAGGCAGATGAGAGGAGAGGATCTTCAAGAATTGAACTTAGAAGATTTAAAGCAATTAGAAAGAGTGCTTGAAGTAGGCCTCGCTCGAGTTCTTCAAACCAAGGAAACGAAGATTATGAGTGAAATTGATGCGCTTGAGCTTAAGGGAGCGAGGCTGATAGAAGAGAACAAGATGCTTAAACAGCAGATGTTAAGGATGTGGAATGAAAGAAGGCCAGTGGTTGTGGATTCTGACGTTGTAGTGGCGGAAGAAGGAGTTTCGTCGGAATCCGCCGCCAACGTCTGCAGCTGCAACAGCGGCCCTCCCGCCGACGATGACAGCTCCGACACCTCTCTCAAATTAGGGCTTTCTTGCCCATATTGA 684 49.12 MAREKIKIKKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFDFSGSSVKDVVARYNLHSSNLGKLEYPSLELQLENSNHVRLSKEVADKSHQLRQMRGEDLQELNLEDLKQLERVLEVGLARVLQTKETKIMSEIDALELKGARLIEENKMLKQQMLRMWNERRPVVVDSDVVVAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGLSCPY 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4743159 4750282 + Hsped.10g04230.1 Hepe10g0423 580970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0423 227 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe10g0423 227 MobiDBLite consensus disorder prediction 198 218 - -
Hepe10g0423 227 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe10g0423 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe10g0423 227 Pfam K-box region 90 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe10g0423 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 Coils Coil 149 169 - -
Hepe10g0423 227 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0423 227 FunFam Transcription factor, MADS-box 13 83 - -
Hepe10g0423 227 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0720 Hepe-Chr2:7912234 Hepe10g0423 Hepe-Chr10:4743159 7.48e-54 dispersed
Hepe07g0362 Hepe-Chr7:3674099 Hepe10g0423 Hepe-Chr10:4743159 4.10e-53 dispersed
Hepe07g2502 Hepe-Chr7:69351187 Hepe10g0423 Hepe-Chr10:4743159 1.77e-15 dispersed
Hepe10g0423 Hepe-Chr10:4743159 Hepe10g0567 Hepe-Chr10:6769448 4.93e-27 dispersed
Hepe01g2184 Hepe-Chr1:86516586 Hepe10g0423 Hepe-Chr10:4743159 1.37e-30 wgd
Hepe10g0423 Hepe-Chr10:4743159 Hepe04g1384 Hepe-Chr4:69499031 1.11e-29 wgd
Hepe10g0423 Hepe-Chr10:4743159 Hepe04g1400 Hepe-Chr4:69624078 2.37e-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56453 PF01486 K-box 2.50E-13 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0423 - - - 0.0