Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0430 ATGGTCCATGCTGGTTCTACCCAATTTTCTCATAAACTGGGGATTCAAAGTGTTCGTGGATGCAATAAGTTAAATATTAGTGGCAAGGGAAAGACCCGTCTACATCTTGTTACTATAATTCCTACATCACACGGTCTGAGGCATGATTTGGGAAGTCTTCAGCTCTTACGTAGTGTAAATCACCCGATGTATCCTGTGTCTTCCAGAGCAAATGTATTTGTGTGTCGATCTATTCTGGAACCAGGAGGCGGCGTTGGGACCGCTGTTCTAAAATCTGCAGCTGTGGTTTTGACAAGATCTTATGATGCTTTGCATGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGCACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATAACAGTTGGAAGAAAAGTAGTACATACCATGTTTTGACTTCGTATGTTCAGCCCTTACTGCTATGGACTGGAGCTACCCTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGTTGTCAAACAACGACTTCTGAATTTTGTTCGATCTTTGTCTACTGTTGTGGCATTTGCCTATTGTATATCAAGTTTGATTCAACAAGTCCAAAAATTTGCTACTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACCAACTTTCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGATAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTCTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACTATTATCCGAGGTGATGATCGTGAAGCAGTCCATATTCCAAATCACAAGTTCACTGTTAGTGTTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAACGTCAATTCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCTACTCCTATTCGCACTGTTCAGAAAATATACGGTGAGCCTGACTTGGAGAATGTGCCATTTTCCGAGACCATGTATTCTCGTACAGGGGGGGCTACTAACCGTCCTCTGCTTCTTATCGAGCCAACTTATAAAGTCAATGGTGATGATAAAGCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAGAAGGATGCCAAACAAGAAGCAGTCTCAACATCAAATCTTGATATGAAAACAGATGACAAAAAATCAACTTCTCCATCTGGTACAGCACCTAAGCCTTCAACAGGGCCCGTATCCACAGCCAACACACAGACCCAGAATCTATCAACCAGTAGTACTCCAGAACAAAGCAATGAGATAAAAGGAGAAAAGAAAGATCTCATGGGACTGAATTCCAAGGATAATACGCCGAGAGGGACTTCGCCCAAAAGGTCGCACTCAGCCTCCAGTCCCGGCAGCGAGAAAGCTGATATTCCTTCTTCGAGCTTGCAGAATAAGCAAGATGGTGAGAAGCCAGCGGCCAGGCCGCCGATGGAGGAGAATATTGTCCTGGGAGTTGCCTTGGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATATGGATCCGTCTCCCTTTCACTCTCCTGCAGATTCAAAAGAAAGTTCCACACATAGGAATGGGAGTGAGTTTCTTTCCAATAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGAGGTGCGACAAAAAATGATTGA 2103 43.51 MVHAGSTQFSHKLGIQSVRGCNKLNISGKGKTRLHLVTIIPTSHGLRHDLGSLQLLRSVNHPMYPVSSRANVFVCRSILEPGGGVGTAVLKSAAVVLTRSYDALHGSPLLLKLIPAACVIAFAAWGVAPLMRLGRILFLHEPDNSWKKSSTYHVLTSYVQPLLLWTGATLICRALDPVVLPSVASQVVKQRLLNFVRSLSTVVAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVINEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSVVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNSENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEPDLENVPFSETMYSRTGGATNRPLLLIEPTYKVNGDDKAKVSSRPTRSSNEEKDAKQEAVSTSNLDMKTDDKKSTSPSGTAPKPSTGPVSTANTQTQNLSTSSTPEQSNEIKGEKKDLMGLNSKDNTPRGTSPKRSHSASSPGSEKADIPSSSLQNKQDGEKPAARPPMEENIVLGVALEGSKRTLPIDEDMDPSPFHSPADSKESSTHRNGSEFLSNSKDMKDGQMPAVPGGATKND 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4813657 4821060 - Hsped.10g04300.1 Hepe10g0430 580977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0430 700 MobiDBLite consensus disorder prediction 497 535 - -
Hepe10g0430 700 MobiDBLite consensus disorder prediction 497 700 - -
Hepe10g0430 700 MobiDBLite consensus disorder prediction 586 621 - -
Hepe10g0430 700 MobiDBLite consensus disorder prediction 646 671 - -
Hepe10g0430 700 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Hepe10g0430 700 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe10g0430 700 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 686 IPR045042 -
Hepe10g0430 700 Gene3D - 192 296 - -
Hepe10g0430 700 Gene3D - 298 353 IPR023408 -
Hepe10g0430 700 MobiDBLite consensus disorder prediction 536 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0430 K22047 - - csv:101213477 1168.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0565 Hepe-Chr7:6069262 Hepe10g0430 Hepe-Chr10:4813657 2.81e-232 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1964 . 122 510 Mechanosensitive Ion Channel Family AT4G00290 65.6 4.6e-146 515.0
Hepe10g0430 . 10 688 Mechanosensitive Ion Channel Family AT5G10490 57.1 1.9e-200 696.0
Hepe07g0565 . 64 724 Mechanosensitive Ion Channel Family AT5G10490 57.9 2.5e-195 679.1
Hepe10g0430 . 10 653 Mechanosensitive Ion Channel Family AT1G58200 56.9 1.5e-192 669.8
Hepe07g0565 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 51.4 3.2e-174 609.0
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G53470 55.5 3.4e-261 898.3
Hepe08g0320 . 39 915 Mechanosensitive Ion Channel Family AT3G14810 51.8 3.1e-243 838.6
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G78610 58.4 3.9e-278 954.5
Hepe08g0320 . 216 916 Mechanosensitive Ion Channel Family AT2G17000 60.2 3.4e-234 808.5
Hepe09g0905 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.0 6.0e-195 677.9
Hepe03g0405 . 108 684 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71