Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0432 ATGTCAGAACTCGATCGTCCTTCCGCCGCCTCCGCCTCCAAGGAAATTAAGCTGTGGGGCGGCCGCTTCCAGGCCAGCGTCACAGACGCCGTCGAACGCTTTACAGAGTCGATCTCATATGATAAAGACCTTTACAAGCATGACATTAGCGGCAGCCGTGCTCATGCATCCATGCTCGCTAAGCAGGGATTGATGAGTATCAGTGACCGGGACAGTATTCTAGCTGGTCTCGATGAGATTGAGAGGCGTATTCGAAATGGCGAATTCGTCTGGAGAGCTGATAGGGAAGATGTTCACATGAACATTGAAGCTGCACTTACTGATTTGATTGGCGAACCTGCCAAGAAACTGCATACTGCTCGGAGCCGCAACGATCAGGTTGCGACTGATTTTCGATTGTGGTGTCGTGATGCCATTGATTCGATTGTCGAGAGGATTAGAGATTTTCAGGTTGCAATGGTGGACTTGGCAATTAAGAATGCAGGAACTATTGTTCCAGGTTATACACATTTGCAGAGAGCACAGCCCGTCCTACTTCAGCATCTTCTCTTAGCATTCGTTGAGCAGCTTGAAAGGGATGCTGGTCGTTTGCTGGACTGCAGAGTTAGATTGAATTTTTGCCCCTTAGGAGCTTGTGCATTGGCTGGTACTGGCCTCCCAATTGATCGATTCATGACTTCGAGTGCTTTAGGATTCTCATCTCCTTTGAGAAACAGTATTGATGCTGTTTCGGACCGGGATTTTGCAATGGAATTTCTTTCTGTCAATTCCATTACAGCCATTCATCTTTCCCGTCTGGGAGAAGAATGGGTACTGTGGTCCTCCGAGGAGTTTGGATTTATCACACCTAATGACGCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCAGATCCAATGGAACTTGTTCGTGGAAAGTCCGGTCGAGTCATAGGTGATTTAGTAACCCTTCTAACATTATGCAAAGGACTTCCTCTTGCATACAACCGCGATCTGCAGGAAGATAAGGAACCTGTATTTGATAGTGTTAAGACAGTTTTGGGGATGCTTGAGGTTTCAGCTGAGTTTGCTCGGAACATTAGTTTCAATCAGGATAGAATAAAGAAGGCCTTACCTGCTGGTCATCTTGATGCGACCACACTTGCGGACTATCTCGTGCATAAGGGAATACCTTTCAGAACGTCTCATGATATTGTAGGCAAGTCTGTTGCCATGTGTCTTGGAAAGAACTGCCAGCTGAAGGACCTGAGTCTCGAGGATCTGCGAACGTTGAGTCCAATCTTCGACAAGGATGTTTACGAGTTTCTTGGAGTAGAAAATGCAGTTAAGAAATTTTCGTCGTATGGCTCCACGGGATCAGAATGTGTTGCCAGTCAACTCCAGTATTGGATCGAAAAACTCGACATTAGTGAGTAG 1425 46.25 MSELDRPSAASASKEIKLWGGRFQASVTDAVERFTESISYDKDLYKHDISGSRAHASMLAKQGLMSISDRDSILAGLDEIERRIRNGEFVWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVATDFRLWCRDAIDSIVERIRDFQVAMVDLAIKNAGTIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLLDCRVRLNFCPLGACALAGTGLPIDRFMTSSALGFSSPLRNSIDAVSDRDFAMEFLSVNSITAIHLSRLGEEWVLWSSEEFGFITPNDAVSTGSSIMPQKKNPDPMELVRGKSGRVIGDLVTLLTLCKGLPLAYNRDLQEDKEPVFDSVKTVLGMLEVSAEFARNISFNQDRIKKALPAGHLDATTLADYLVHKGIPFRTSHDIVGKSVAMCLGKNCQLKDLSLEDLRTLSPIFDKDVYEFLGVENAVKKFSSYGSTGSECVASQLQYWIEKLDISE 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4842214 4847527 - Hsped.10g04320.1 Hepe10g0432 580979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0432 474 SUPERFAMILY L-aspartase-like 21 470 IPR008948 GO:0003824(InterPro)
Hepe10g0432 474 FunFam Argininosuccinate lyase 37 137 - -
Hepe10g0432 474 ProSitePatterns Fumarate lyases signature. 290 299 IPR020557 GO:0003824(InterPro)
Hepe10g0432 474 PRINTS Argininosuccinate lyase family signature 290 306 - -
Hepe10g0432 474 PRINTS Argininosuccinate lyase family signature 157 177 - -
Hepe10g0432 474 PRINTS Argininosuccinate lyase family signature 208 224 - -
Hepe10g0432 474 PRINTS Argininosuccinate lyase family signature 116 138 - -
Hepe10g0432 474 PRINTS Argininosuccinate lyase family signature 246 270 - -
Hepe10g0432 474 PRINTS Argininosuccinate lyase family signature 325 344 - -
Hepe10g0432 474 Hamap Argininosuccinate lyase [argH]. 17 468 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Hepe10g0432 474 FunFam Argininosuccinate lyase chloroplastic 244 402 - -
Hepe10g0432 474 PRINTS Fumarate lyase superfamily signature 162 180 IPR000362 -
Hepe10g0432 474 PRINTS Fumarate lyase superfamily signature 290 306 IPR000362 -
Hepe10g0432 474 PRINTS Fumarate lyase superfamily signature 117 135 IPR000362 -
Hepe10g0432 474 PRINTS Fumarate lyase superfamily signature 246 273 IPR000362 -
Hepe10g0432 474 Gene3D - 37 244 IPR024083 -
Hepe10g0432 474 Gene3D - 375 447 - -
Hepe10g0432 474 FunFam Argininosuccinate lyase 376 447 - -
Hepe10g0432 474 Pfam Argininosuccinate lyase C-terminal 379 446 IPR029419 -
Hepe10g0432 474 CDD Argininosuccinate_lyase 37 470 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Hepe10g0432 474 Gene3D Fumarase/aspartase (Central domain) 134 463 - -
Hepe10g0432 474 NCBIfam argininosuccinate lyase 18 465 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Hepe10g0432 474 PANTHER ARGININOSUCCINATE LYASE 11 472 IPR009049 GO:0004056(PANTHER)|GO:0004056(InterPro)|GO:0005829(PANTHER)|GO:0042450(InterPro)|GO:0042450(PANTHER)
Hepe10g0432 474 Pfam Lyase 21 315 IPR022761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0432 K01755 - - csv:101213711 871.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2170 Hepe-Chr1:86343353 Hepe10g0432 Hepe-Chr10:4842214 1.76e-289 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54