Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0438 ATGTACGGACGCGCTCAGCCGTTGACTATGGGCGACCAGATCGCCTCCGCCCCCGACTGTAGCGACAACGGCGAGCCTTTGGATAGTCGCCTTGTTCGATATGGAGCTCACTCCCTCGAAGACGGTGGCGGAGTTGGCGGTATCATTGAGGATCTCAACCCTGATGCCGTTTTTGCTTCCGCCGGTGATGGTTTGGATATGGCTATTCAGCGCGGCGATGGGTTAAGTCAGCTCACGCTTTCGTTCCGTGGCCAAGTCTATCTGTTCGACGCTGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCTTGGATTTGGCAAATCAGAATCAGAGGAATGCTGTGGACTTCCCTGTACGCAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTCCGTCAGGAGGTCGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGTAGTGTCTCAGAGTCAGGTCAAGATGATAGTCCATCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGTGTGAAAGTAGTGATGCTGGCAAGGACTTCGATTGCAGACATGGCGGCACCCATGCACAGAGCAATCTTGTTTCATTCTCAAATGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 897 50.39 MYGRAQPLTMGDQIASAPDCSDNGEPLDSRLVRYGAHSLEDGGGVGGIIEDLNPDAVFASAGDGLDMAIQRGDGLSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSLDLANQNQRNAVDFPVRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDDSPSETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESSDAGKDFDCRHGGTHAQSNLVSFSNGDNSALMAEH 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4941738 4949715 + Hsped.10g04380.1 Hepe10g0438 580985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0438 298 MobiDBLite consensus disorder prediction 1 21 - -
Hepe10g0438 298 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 CDD ZnF_GATA 205 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 Gene3D - 197 256 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe10g0438 298 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Hepe10g0438 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Hepe10g0438 298 MobiDBLite consensus disorder prediction 171 208 - -
Hepe10g0438 298 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Hepe10g0438 298 SMART tify_2 71 106 IPR010399 -
Hepe10g0438 298 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 PANTHER GATA TRANSCRIPTION FACTOR 28 72 292 IPR045280 GO:0006355(InterPro)
Hepe10g0438 298 MobiDBLite consensus disorder prediction 278 292 - -
Hepe10g0438 298 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Hepe10g0438 298 MobiDBLite consensus disorder prediction 247 298 - -
Hepe10g0438 298 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 Pfam tify domain 76 105 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0710 Hepe-Chr2:7787619 Hepe10g0438 Hepe-Chr10:4941738 4.30e-69 dispersed
Hepe10g0438 Hepe-Chr10:4941738 Hepe04g0907 Hepe-Chr4:63332278 2.84e-06 dispersed
Hepe10g0438 Hepe-Chr10:4941738 Hepe10g0439 Hepe-Chr10:4953485 3.05e-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56455 PF06203 CCT 1.80E-15 CL0281 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0438 - - - 0.0