Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0438 ATGTACGGACGCGCTCAGCCGTTGACTATGGGCGACCAGATCGCCTCCGCCCCCGACTGTAGCGACAACGGCGAGCCTTTGGATAGTCGCCTTGTTCGATATGGAGCTCACTCCCTCGAAGACGGTGGCGGAGTTGGCGGTATCATTGAGGATCTCAACCCTGATGCCGTTTTTGCTTCCGCCGGTGATGGTTTGGATATGGCTATTCAGCGCGGCGATGGGTTAAGTCAGCTCACGCTTTCGTTCCGTGGCCAAGTCTATCTGTTCGACGCTGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCTTGGATTTGGCAAATCAGAATCAGAGGAATGCTGTGGACTTCCCTGTACGCAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTCCGTCAGGAGGTCGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGTAGTGTCTCAGAGTCAGGTCAAGATGATAGTCCATCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGTGTGAAAGTAGTGATGCTGGCAAGGACTTCGATTGCAGACATGGCGGCACCCATGCACAGAGCAATCTTGTTTCATTCTCAAATGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 897 50.39 MYGRAQPLTMGDQIASAPDCSDNGEPLDSRLVRYGAHSLEDGGGVGGIIEDLNPDAVFASAGDGLDMAIQRGDGLSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSLDLANQNQRNAVDFPVRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDDSPSETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESSDAGKDFDCRHGGTHAQSNLVSFSNGDNSALMAEH 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4941738 4949715 + Hsped.10g04380.1 Hepe10g0438 580985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0438 298 MobiDBLite consensus disorder prediction 1 21 - -
Hepe10g0438 298 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 CDD ZnF_GATA 205 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 Gene3D - 197 256 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe10g0438 298 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Hepe10g0438 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Hepe10g0438 298 MobiDBLite consensus disorder prediction 171 208 - -
Hepe10g0438 298 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Hepe10g0438 298 SMART tify_2 71 106 IPR010399 -
Hepe10g0438 298 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 PANTHER GATA TRANSCRIPTION FACTOR 28 72 292 IPR045280 GO:0006355(InterPro)
Hepe10g0438 298 MobiDBLite consensus disorder prediction 278 292 - -
Hepe10g0438 298 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Hepe10g0438 298 MobiDBLite consensus disorder prediction 247 298 - -
Hepe10g0438 298 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0438 298 Pfam tify domain 76 105 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0438 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0710 Hepe-Chr2:7787619 Hepe10g0438 Hepe-Chr10:4941738 4.30e-69 dispersed
Hepe10g0438 Hepe-Chr10:4941738 Hepe04g0907 Hepe-Chr4:63332278 2.84e-06 dispersed
Hepe10g0438 Hepe-Chr10:4941738 Hepe10g0439 Hepe-Chr10:4953485 3.05e-59 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe03g0226 . 1 180 Tify Gene Family AT4G14713 52.1 4.1e-46 181.8
Hepe03g0226 . 1 285 Tify Gene Family AT4G14720 52.0 2.1e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56455 PF06203 CCT 1.80E-15 CL0281 Hepe TF