Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0438 | ATGTACGGACGCGCTCAGCCGTTGACTATGGGCGACCAGATCGCCTCCGCCCCCGACTGTAGCGACAACGGCGAGCCTTTGGATAGTCGCCTTGTTCGATATGGAGCTCACTCCCTCGAAGACGGTGGCGGAGTTGGCGGTATCATTGAGGATCTCAACCCTGATGCCGTTTTTGCTTCCGCCGGTGATGGTTTGGATATGGCTATTCAGCGCGGCGATGGGTTAAGTCAGCTCACGCTTTCGTTCCGTGGCCAAGTCTATCTGTTCGACGCTGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCTTGGATTTGGCAAATCAGAATCAGAGGAATGCTGTGGACTTCCCTGTACGCAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTCCGTCAGGAGGTCGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGTAGTGTCTCAGAGTCAGGTCAAGATGATAGTCCATCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGTGTGAAAGTAGTGATGCTGGCAAGGACTTCGATTGCAGACATGGCGGCACCCATGCACAGAGCAATCTTGTTTCATTCTCAAATGGTGATAACTCTGCTTTAATGGCTGAGCATTAG | 897 | 50.39 | MYGRAQPLTMGDQIASAPDCSDNGEPLDSRLVRYGAHSLEDGGGVGGIIEDLNPDAVFASAGDGLDMAIQRGDGLSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSLDLANQNQRNAVDFPVRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDDSPSETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESSDAGKDFDCRHGGTHAQSNLVSFSNGDNSALMAEH | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4941738 | 4949715 | + | Hsped.10g04380.1 | Hepe10g0438 | 580985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0438 | 298 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Hepe10g0438 | 298 | SMART | GATA_3 | 200 | 253 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0438 | 298 | CDD | ZnF_GATA | 205 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0438 | 298 | Gene3D | - | 197 | 256 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Hepe10g0438 | 298 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Hepe10g0438 | 298 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 200 | 250 | - | - | |
Hepe10g0438 | 298 | MobiDBLite | consensus disorder prediction | 171 | 208 | - | - | |
Hepe10g0438 | 298 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Hepe10g0438 | 298 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Hepe10g0438 | 298 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 233 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0438 | 298 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 72 | 292 | IPR045280 | GO:0006355(InterPro) | |
Hepe10g0438 | 298 | MobiDBLite | consensus disorder prediction | 278 | 292 | - | - | |
Hepe10g0438 | 298 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Hepe10g0438 | 298 | MobiDBLite | consensus disorder prediction | 247 | 298 | - | - | |
Hepe10g0438 | 298 | Pfam | GATA zinc finger | 206 | 242 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0438 | 298 | ProSiteProfiles | GATA-type zinc finger domain profile. | 200 | 259 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0438 | 298 | Pfam | tify domain | 76 | 105 | IPR010399 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g0710 | Hepe-Chr2:7787619 | Hepe10g0438 | Hepe-Chr10:4941738 | 4.30e-69 | dispersed | |
Hepe10g0438 | Hepe-Chr10:4941738 | Hepe04g0907 | Hepe-Chr4:63332278 | 2.84e-06 | dispersed | |
Hepe10g0438 | Hepe-Chr10:4941738 | Hepe10g0439 | Hepe-Chr10:4953485 | 3.05e-59 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56455 | PF06203 | CCT | 1.80E-15 | CL0281 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0438 | - | - | - | 0.0 |