Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0439 | ATGGCGGCTGTGAATCCTCAGCCGTTGCAAGCGCGTCCCTTCCAGGAACATGTTCAAGTTCCTACAATGATGGCGGATGACGACGGTGAATATGAAGATGGCGGCGGCGGTGGCGGCGGTGGTGATGTTATGGATGATGTTGAAGAGGCTCATTTGACTTCGGTGAGCCTTGCGAACCATGTGGGGTTGGTTATGGCATCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGTGAGGTTTATGTGTTCCCCGCAGTTACTCCAGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGATTTGCCAACCGGTGTACCTACCATGGAAGTACCATACGATCATGATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGGTGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTCGCACAAAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGCACACGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCGGGACCGAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACACTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATTTGGAACCTGAAACCCCGATGGATGTTAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGACGGACATGGAACTCCTGAGGATCCTGGTAAAACTATGACTGAAGGCTCCAGTAATCCTTCAGTTGACCTGGATGAGGAAGACATAATTGAAACCACGGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGATCTTGCTAATCCCTCGGATATCGATATAGACATCCCTACTAACTTTGATTAG | 1059 | 47.78 | MAAVNPQPLQARPFQEHVQVPTMMADDDGEYEDGGGGGGGGDVMDDVEEAHLTSVSLANHVGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPTGVPTMEVPYDHDNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHLEPETPMDVKPTIMEGEFSGIQDGHGTPEDPGKTMTEGSSNPSVDLDEEDIIETTGDLTNSLPMRIVNHSTNGDEQEPLVDLANPSDIDIDIPTNFD | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4953485 | 4960627 | + | Hsped.10g04390.1 | Hepe10g0439 | 580986 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0439 | 352 | SMART | tify_2 | 65 | 100 | IPR010399 | - | |
Hepe10g0439 | 352 | Gene3D | - | 200 | 250 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Hepe10g0439 | 352 | ProSiteProfiles | GATA-type zinc finger domain profile. | 198 | 246 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0439 | 352 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 199 | 248 | - | - | |
Hepe10g0439 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 22 | 300 | IPR045280 | GO:0006355(InterPro) | |
Hepe10g0439 | 352 | ProSitePatterns | GATA-type zinc finger domain. | 204 | 231 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0439 | 352 | ProSiteProfiles | Tify domain profile. | 65 | 100 | IPR010399 | - | |
Hepe10g0439 | 352 | SMART | GATA_3 | 198 | 251 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0439 | 352 | MobiDBLite | consensus disorder prediction | 277 | 300 | - | - | |
Hepe10g0439 | 352 | Pfam | GATA zinc finger | 204 | 240 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0439 | 352 | Pfam | tify domain | 68 | 99 | IPR010399 | - | |
Hepe10g0439 | 352 | MobiDBLite | consensus disorder prediction | 326 | 352 | - | - | |
Hepe10g0439 | 352 | CDD | ZnF_GATA | 203 | 247 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe10g0439 | 352 | Pfam | CCT motif | 133 | 174 | IPR010402 | GO:0005515(InterPro) | |
Hepe10g0439 | 352 | ProSiteProfiles | CCT domain profile. | 133 | 175 | IPR010402 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g2127 | Hepe-Chr3:79395969 | Hepe10g0439 | Hepe-Chr10:4953485 | 2.20e-64 | dispersed | |
Hepe09g0101 | Hepe-Chr9:825148 | Hepe10g0439 | Hepe-Chr10:4953485 | 8.56e-09 | dispersed | |
Hepe10g0439 | Hepe-Chr10:4953485 | Hepe04g0907 | Hepe-Chr4:63332278 | 1.34e-06 | dispersed | |
Hepe10g0438 | Hepe-Chr10:4941738 | Hepe10g0439 | Hepe-Chr10:4953485 | 3.05e-59 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56456 | PF06203 | CCT | 1.30E-13 | CL0281 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0439 | - | - | - | 0.0 |