Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0439 ATGGCGGCTGTGAATCCTCAGCCGTTGCAAGCGCGTCCCTTCCAGGAACATGTTCAAGTTCCTACAATGATGGCGGATGACGACGGTGAATATGAAGATGGCGGCGGCGGTGGCGGCGGTGGTGATGTTATGGATGATGTTGAAGAGGCTCATTTGACTTCGGTGAGCCTTGCGAACCATGTGGGGTTGGTTATGGCATCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGTGAGGTTTATGTGTTCCCCGCAGTTACTCCAGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGATTTGCCAACCGGTGTACCTACCATGGAAGTACCATACGATCATGATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGGTGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTCGCACAAAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGCACACGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCGGGACCGAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACACTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATTTGGAACCTGAAACCCCGATGGATGTTAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGACGGACATGGAACTCCTGAGGATCCTGGTAAAACTATGACTGAAGGCTCCAGTAATCCTTCAGTTGACCTGGATGAGGAAGACATAATTGAAACCACGGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGATCTTGCTAATCCCTCGGATATCGATATAGACATCCCTACTAACTTTGATTAG 1059 47.78 MAAVNPQPLQARPFQEHVQVPTMMADDDGEYEDGGGGGGGGDVMDDVEEAHLTSVSLANHVGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPTGVPTMEVPYDHDNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHLEPETPMDVKPTIMEGEFSGIQDGHGTPEDPGKTMTEGSSNPSVDLDEEDIIETTGDLTNSLPMRIVNHSTNGDEQEPLVDLANPSDIDIDIPTNFD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4953485 4960627 + Hsped.10g04390.1 Hepe10g0439 580986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0439 352 SMART tify_2 65 100 IPR010399 -
Hepe10g0439 352 Gene3D - 200 250 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe10g0439 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Hepe10g0439 352 PANTHER GATA TRANSCRIPTION FACTOR 28 22 300 IPR045280 GO:0006355(InterPro)
Hepe10g0439 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Hepe10g0439 352 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 MobiDBLite consensus disorder prediction 277 300 - -
Hepe10g0439 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 Pfam tify domain 68 99 IPR010399 -
Hepe10g0439 352 MobiDBLite consensus disorder prediction 326 352 - -
Hepe10g0439 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 Pfam CCT motif 133 174 IPR010402 GO:0005515(InterPro)
Hepe10g0439 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2127 Hepe-Chr3:79395969 Hepe10g0439 Hepe-Chr10:4953485 2.20e-64 dispersed
Hepe09g0101 Hepe-Chr9:825148 Hepe10g0439 Hepe-Chr10:4953485 8.56e-09 dispersed
Hepe10g0439 Hepe-Chr10:4953485 Hepe04g0907 Hepe-Chr4:63332278 1.34e-06 dispersed
Hepe10g0438 Hepe-Chr10:4941738 Hepe10g0439 Hepe-Chr10:4953485 3.05e-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe03g0226 . 1 180 Tify Gene Family AT4G14713 52.1 4.1e-46 181.8
Hepe03g0226 . 1 285 Tify Gene Family AT4G14720 52.0 2.1e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56456 PF06203 CCT 1.30E-13 CL0281 Hepe TF