Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0439 ATGGCGGCTGTGAATCCTCAGCCGTTGCAAGCGCGTCCCTTCCAGGAACATGTTCAAGTTCCTACAATGATGGCGGATGACGACGGTGAATATGAAGATGGCGGCGGCGGTGGCGGCGGTGGTGATGTTATGGATGATGTTGAAGAGGCTCATTTGACTTCGGTGAGCCTTGCGAACCATGTGGGGTTGGTTATGGCATCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGTGAGGTTTATGTGTTCCCCGCAGTTACTCCAGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGATTTGCCAACCGGTGTACCTACCATGGAAGTACCATACGATCATGATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGGTGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTCGCACAAAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGCACACGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCGGGACCGAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACACTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATTTGGAACCTGAAACCCCGATGGATGTTAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGACGGACATGGAACTCCTGAGGATCCTGGTAAAACTATGACTGAAGGCTCCAGTAATCCTTCAGTTGACCTGGATGAGGAAGACATAATTGAAACCACGGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTGTTGATCTTGCTAATCCCTCGGATATCGATATAGACATCCCTACTAACTTTGATTAG 1059 47.78 MAAVNPQPLQARPFQEHVQVPTMMADDDGEYEDGGGGGGGGDVMDDVEEAHLTSVSLANHVGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPTGVPTMEVPYDHDNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHLEPETPMDVKPTIMEGEFSGIQDGHGTPEDPGKTMTEGSSNPSVDLDEEDIIETTGDLTNSLPMRIVNHSTNGDEQEPLVDLANPSDIDIDIPTNFD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4953485 4960627 + Hsped.10g04390.1 Hepe10g0439 580986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0439 352 SMART tify_2 65 100 IPR010399 -
Hepe10g0439 352 Gene3D - 200 250 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe10g0439 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Hepe10g0439 352 PANTHER GATA TRANSCRIPTION FACTOR 28 22 300 IPR045280 GO:0006355(InterPro)
Hepe10g0439 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Hepe10g0439 352 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 MobiDBLite consensus disorder prediction 277 300 - -
Hepe10g0439 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 Pfam tify domain 68 99 IPR010399 -
Hepe10g0439 352 MobiDBLite consensus disorder prediction 326 352 - -
Hepe10g0439 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0439 352 Pfam CCT motif 133 174 IPR010402 GO:0005515(InterPro)
Hepe10g0439 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2127 Hepe-Chr3:79395969 Hepe10g0439 Hepe-Chr10:4953485 2.20e-64 dispersed
Hepe09g0101 Hepe-Chr9:825148 Hepe10g0439 Hepe-Chr10:4953485 8.56e-09 dispersed
Hepe10g0439 Hepe-Chr10:4953485 Hepe04g0907 Hepe-Chr4:63332278 1.34e-06 dispersed
Hepe10g0438 Hepe-Chr10:4941738 Hepe10g0439 Hepe-Chr10:4953485 3.05e-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56456 PF06203 CCT 1.30E-13 CL0281 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0439 - - - 0.0