Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0445 ATGGCCTTCACTCTCTGCAGCAGAGCCGCGACTCCATTGCTATCGTCCTCTGCTCTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGATTCTCCAATTTCTTCATCGCCAAAACGGGCTCCGCTTTGTCTCTTCCTTTCTCTCCTCTCTTCAGATCGAAATTTGGTGGTCAAGGACCAGCTAGGAGCGTACATTTGATCAAAATGGAAGGGAGTAGTGCCGCGGTGCCTAGCATTGTTGTTTATGTCACCGTTCCTAACAGGGAAGCAGGTAAGAAATTGGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTACCTGCAACTATGCGTTGCCAAAATACGCGGGGAAAAACAGCGGGAGTATTGGACTTAGTTCGAGTTGAGTCGAAGGCCGTCGACATGCCGCCTCTGGGTGTGGAACTCTTCATTACAGAACGTCAGGTGATGATGGATAATGGTATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGACTGGAATTCGATACAATGGAGTCGACAACGTACTCGAAGTTCTCAACGACGAATCTAACAGAGGGTACTGGGACCTTGTGTGGAGCCCATCAGCCTCCACAACTGCGTCGTTTGATGTGATAAAATCTACGGGTTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACTAGAAAATGGGATCTGTCTTTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGGTTCTACTCTTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCACTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCGCTTCCAGATGACCGGTCTCTGCCGAGAGGCCGAGCCCTGGCCTATCCAGAGGCTGTCCTGCTCGTGGACCCGGTCGAACCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAATATTCATGCGACAACAAAGACAGCGGCGTCCATGGATGGATATCCACCGACCCACCAGTCGGGTTCTGGCTAATCACCCCCAGCAATGAGTTCCGGTCCGGTGGACCCGTCAAACAGAACCTGACTTCACACGTCGGCCCAACCACCCTTGCGGTTTTTATTAGCGCCCATTACGCGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCCTGGAAGAAAGTTTTCGGTCCTGTCTTCATTTATCTCAACTCCACCTACGATTCCAGCGACGCGCTTCAGCTCTGGGAAGATGCCAAAGCTCAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGAGGACTTTCCAAAGTCAAACCAACGGGGTAATATCAGCGGTAGACTATTAGTCAACGATAGTGAGGACTTCATACCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCTGGAGATGTAGGATCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGATGTTTTTTCATTGACGGCGTTAGGACAGGCGACTACAATCTATATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTAATGATGCTCTCATCAACATAACAGAAGGTAGTGAGATAGACTTGGGTGACATAACATACAAGCCTCCAAGAGAAGGGGCTACACTATGGGAAATAGGAATCCCCGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTGACCATCCTGATAAATTTCGGCAGTACGGTCTGTGGGAAAGATACAGTGAATTGTATCCCGACGCAGATTTGGTATATACCGTTGGCGTCAGTGATTACACTAAGGATTGGTTCTTTGCTCAGCTCACCAGGAAGACAGAAAATGGAACATACAAGGGAACAACATGGCAAGTGAAGTTCAAGCTGGACAACGTGGACAACAAAGCAACTTACAAGCTTCGGGTCGCATTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTGGGAGTAAATGACCCAAAAGCAAAGCCAGTGTTCTCGAGTGGGCTGATCGGAAGGGACAATTCGATCGCCAGACATGGCATTCACGGCCTGCACTGGCTTTACAATGTGGATATTCCGGCCAACCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCCAGAAACACAGGGCCTTTCCAAGCCATTATGTACGATTATATTCGTCTAGAAGCTCCTCCACCTCCATTCTCTGCCCATACTTTGAAATAG 2346 48.93 MAFTLCSRAATPLLSSSALRRRLPLVGAFCVLSFGFSNFFIAKTGSALSLPFSPLFRSKFGGQGPARSVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPATMRCQNTRGKTAGVLDLVRVESKAVDMPPLGVELFITERQVMMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDESNRGYWDLVWSPSASTTASFDVIKSTGFEVIVENEDQVELSFTRKWDLSFEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSLPRGRALAYPEAVLLVDPVEPELQGEVDDKYQYSCDNKDSGVHGWISTDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDAKAQATIEVQSWPYSFPASEDFPKSNQRGNISGRLLVNDSEDFIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGCFFIDGVRTGDYNLYAWVPGFIGDYRNDALINITEGSEIDLGDITYKPPREGATLWEIGIPDRSAAEFYVPDPNPNYVNKLYLDHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQLTRKTENGTYKGTTWQVKFKLDNVDNKATYKLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLHWLYNVDIPANRLVTGDNTIFFTQPRNTGPFQAIMYDYIRLEAPPPPFSAHTLK 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5032406 5043021 - Hsped.10g04450.1 Hepe10g0445 580992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0445 781 CDD RGL4_M 475 571 IPR029413 -
Hepe10g0445 781 SUPERFAMILY GlnB-like 84 117 IPR011322 -
Hepe10g0445 781 Pfam Rhamnogalacturonate lyase family 149 344 IPR010325 -
Hepe10g0445 781 FunFam Rhamnogalacturonate lyase B 472 568 - -
Hepe10g0445 781 Gene3D - 151 445 IPR014718 GO:0030246(InterPro)
Hepe10g0445 781 Pfam CutA1 divalent ion tolerance protein 84 117 IPR004323 GO:0010038(InterPro)
Hepe10g0445 781 Gene3D - 64 128 IPR015867 -
Hepe10g0445 781 SUPERFAMILY Starch-binding domain-like 472 569 IPR013784 GO:0030246(InterPro)
Hepe10g0445 781 Gene3D - 578 769 - -
Hepe10g0445 781 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 142 772 IPR051850 -
Hepe10g0445 781 SUPERFAMILY Galactose mutarotase-like 164 436 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Hepe10g0445 781 SUPERFAMILY Galactose-binding domain-like 579 769 IPR008979 -
Hepe10g0445 781 Pfam Polysaccharide lyase family 4, domain III 581 768 IPR029411 -
Hepe10g0445 781 CDD RGL4_C 583 769 - -
Hepe10g0445 781 Gene3D - 472 568 - -
Hepe10g0445 781 CDD RGL4_N 156 442 - -
Hepe10g0445 781 Pfam Polysaccharide lyase family 4, domain II 495 567 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2181 Hepe-Chr1:86481175 Hepe10g0445 Hepe-Chr10:5032406 8.47e-311 dispersed
Hepe01g2182 Hepe-Chr1:86495821 Hepe10g0445 Hepe-Chr10:5032406 4.65e-308 dispersed
Hepe07g0578 Hepe-Chr7:6237066 Hepe10g0445 Hepe-Chr10:5032406 8.42e-272 dispersed
Hepe04g1757 Hepe-Chr4:72569219 Hepe10g0445 Hepe-Chr10:5032406 9.26e-240 transposed
Hepe01g2180 Hepe-Chr1:86473331 Hepe10g0445 Hepe-Chr10:5032406 7.57e-315 wgd
Hepe10g0445 Hepe-Chr10:5032406 Hepe04g1385 Hepe-Chr4:69514034 4.61e-253 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0445 K18195 - csv:101215720 1208.74