Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0451 ATGGAATTCGAAGAGGAGCACGACGACCAAGACGATGAAACAATGGAAGAGATGCCCATCGCCCACCACTACGACTCGCTCAGTAACTCAGCCTCGACTCGGCCGAAACCCGGAGAGGGCTCATCGGCGGCGAGAAAAATCGGCAGCGGCGGCGGCGGCGGCGGCGGAGGGATTATTAAATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGGCACGCGTTGGATGGTTGCGGCGAGTTTATGCCGGCGGGAGAGGAAGGGAGTATAGACGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACCAATTCCGATCAGGGACATTACTATTACCAGCAACAGCAGCAGCAACAGTTTTGTTCTTACCGTGGGCCCCCACCACAGCCGTCTGCTTACGTGTACTTGACGGGGGCTCCAATTCAGCAGAGGCCGTTGGCGTTGCCGGCGGCGGCGTCCGGGAGGGACGAGGACGATGCATCGAATCCGAGCAGTAGCGGCGGTGGAGGCGGCGGAGGAAGTGGGTTTTTGAAGAAGAGATTTAGAACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTAGGGTTTGCAGAGAAAGTTGGATGGACAATTCAGAAACACGACGAGGCCGACGTCGAACGGTTCTGTTCAGAATCCGGTGTCCGGCGGCAGGTATTAAAGGTATGGATGCACAACAACAAGCATACTTTGGGCAAGAAACCCTAG 750 54.93 MEFEEEHDDQDDETMEEMPIAHHYDSLSNSASTRPKPGEGSSAARKIGSGGGGGGGGIIKYRECLKNHAIGIGGHALDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETNSDQGHYYYQQQQQQQFCSYRGPPPQPSAYVYLTGAPIQQRPLALPAAASGRDEDDASNPSSSGGGGGGGSGFLKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVERFCSESGVRRQVLKVWMHNNKHTLGKKP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5146378 5148855 + Hsped.10g04510.1 Hepe10g0451 580998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0451 249 MobiDBLite consensus disorder prediction 1 53 - -
Hepe10g0451 249 SUPERFAMILY Homeodomain-like 172 247 IPR009057 -
Hepe10g0451 249 MobiDBLite consensus disorder prediction 1 15 - -
Hepe10g0451 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
Hepe10g0451 249 MobiDBLite consensus disorder prediction 157 186 - -
Hepe10g0451 249 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
Hepe10g0451 249 Gene3D - 170 247 - -
Hepe10g0451 249 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 110 IPR006456 -
Hepe10g0451 249 NCBIfam homeobox domain, ZF-HD class 186 242 IPR006455 -
Hepe10g0451 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 244 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe10g0451 249 FunFam Zinc-finger homeodomain protein 2 181 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0351 Hepe-Chr7:3585011 Hepe10g0451 Hepe-Chr10:5146378 6.73e-15 dispersed
Hepe07g0601 Hepe-Chr7:6600010 Hepe10g0451 Hepe-Chr10:5146378 3.32e-54 dispersed
Hepe07g0719 Hepe-Chr7:8640262 Hepe10g0451 Hepe-Chr10:5146378 4.05e-49 dispersed
Hepe07g2509 Hepe-Chr7:69424108 Hepe10g0451 Hepe-Chr10:5146378 1.86e-21 dispersed
Hepe10g0451 Hepe-Chr10:5146378 Hepe10g0633 Hepe-Chr10:7943709 1.14e-53 dispersed
Hepe10g0451 Hepe-Chr10:5146378 Hepe04g1409 Hepe-Chr4:69733318 1.77e-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56457 PF04770 ZF-HD_dimer 6.50E-30 No_clan Hepe TF