Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0459 ATGGGCCCGTTGGTCCATCTTTCGGCCCATTTGAAAGCCCAAAGGATCGGATCCTCACGGAAGACGAGCTTCGTTCTCGAACCGTATAAATTCGCCGACTCTCCGACACCAAAACTGCAGCACAGCACCCGCGAGAGAAAAATGGCTCGCCCTATGTCCGGCATCAACACCGTTAAAACCCCCGCCGTCAAGCTCCCTATTTCCATTCCCTCTTTCACTTCCGCCTCCCTCTGCAGAGGCAGAACCAGGCTGAGGATGCTCTCCGCCGCCTCTTCTTCCTCTCCGGCGAAGGCGAGCCTGACCCACCGCCAAGACTCGCCGCGTAATGTGTCCTTGGATGCTTTGATCAAAGGGGATCGTAGAGAGGAGGTCGTCGCCGCCATTGACAGGTCGTTGACCAATTGTCTCTCTGAGACGAATCTCCAATTGACCGTTCCTGGGATTAAGTCCAAAACCAGGGGCAAGGTGAGAGATATATATGACTATGGGGATTATCTTATTTTGGTTACAACTGATCGACAGAGTGCGTTCGATAGAGTTCTTGCTTCCATACCTTTTAAGGGTCAGGTTCTTAATGAGACCAGCTTATGGTGGTTCGACAGAACACAGCACATCACTTCAAATGCAGTTGTGTCAGTTCCGGATAAAAATGTCACGATTGCAAAGAAGTGTTCAGTTTTTCCTGTTGAGTTTGTTGTTAGAGGATTTGTCACTGGAAGCACCGATACATCATTATGGACAGTGTACAATAAAGGGGTGCGAAACTACTGTGGAAATGGGCTCCCAGACGGCTTGGTTAAAAATCAAAAGCTTTCTTCCAATATACTTACTCCAACAACGAAGGCTGCTACTCATGACGTTCCCGTGACACCAGATGAGATTATTGAAAGGGGGCTGATGACTCAAGCTGATTATGATGAAGCAAGTAGAAAGGCATTAAGCTTGTTCGAGTATGGGCAGAAAGTGGCTTCGGAGCATGGTATGATACTGGTTGACACAAAGTATGAGTTTGGAAAGGGAGAGGATGGTTCCATTCTTTTAATTGATGAGGTGCATACACCTGATTCGAGCCGATACTGGATTGCACAGTCCTATGAAGAACGCTTTCAAAATGGCCTTGAACCCGAAAATGTTGACAAGGAATTCTTGAGGTTGTGGTTCAAAGATAATTGCAATCCATATGAAGACGAGGTTCTCCCAGATGCTCCTCAAGAGCTTGTCCGTGAACTGTCATGGCGATATATCTTCTTGTACGAGACAATAACCAAATCCAAATTTGAGGTGCCATCGACAGAGGAACCAGTACACGATCGGATATCACGAAACGTTAAAACGGCACTGGCATCGCTAAAATGA 1356 47.2 MGPLVHLSAHLKAQRIGSSRKTSFVLEPYKFADSPTPKLQHSTRERKMARPMSGINTVKTPAVKLPISIPSFTSASLCRGRTRLRMLSAASSSSPAKASLTHRQDSPRNVSLDALIKGDRREEVVAAIDRSLTNCLSETNLQLTVPGIKSKTRGKVRDIYDYGDYLILVTTDRQSAFDRVLASIPFKGQVLNETSLWWFDRTQHITSNAVVSVPDKNVTIAKKCSVFPVEFVVRGFVTGSTDTSLWTVYNKGVRNYCGNGLPDGLVKNQKLSSNILTPTTKAATHDVPVTPDEIIERGLMTQADYDEASRKALSLFEYGQKVASEHGMILVDTKYEFGKGEDGSILLIDEVHTPDSSRYWIAQSYEERFQNGLEPENVDKEFLRLWFKDNCNPYEDEVLPDAPQELVRELSWRYIFLYETITKSKFEVPSTEEPVHDRISRNVKTALASLK 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5235023 5238703 + Hsped.10g04590.1 Hepe10g0459 581006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0459 451 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 148 412 IPR028923 -
Hepe10g0459 451 ProSitePatterns SAICAR synthetase signature 2. 330 338 IPR018236 GO:0004639(InterPro)|GO:0006164(InterPro)
Hepe10g0459 451 Pfam SAICAR synthetase 152 397 IPR028923 -
Hepe10g0459 451 CDD SAICAR_synt_Sc 153 422 - -
Hepe10g0459 451 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 226 376 - -
Hepe10g0459 451 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 91 447 - GO:0004639(PANTHER)|GO:0005737(PANTHER)|GO:0006189(PANTHER)|GO:0009570(PANTHER)
Hepe10g0459 451 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 138 230 - -
Hepe10g0459 451 SUPERFAMILY SAICAR synthase-like 142 426 - -
Hepe10g0459 451 Gene3D - 230 372 - -
Hepe10g0459 451 ProSitePatterns SAICAR synthetase signature 1. 226 240 IPR018236 GO:0004639(InterPro)|GO:0006164(InterPro)
Hepe10g0459 451 Gene3D Phosphorylase Kinase; domain 1 135 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0459 K01923 - - csv:101217870 742.265
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g472 . . . . . . . . Cmo05g00551 . . . . . Sed04g0177 . . Bhi04g00801 Tan02g2438 Cmetu03g0642 . Hepe10g0459 . Lcy13g1509 Cla08g01141 Cam08g1600 Cec08g1171 Cco08g1298 Clacu08g1300 . Cre08g1083 . . Cone17ag1194 . . . . Cme03g01831 Blo17g00106 . . . . Bpe14g00472 . Bma02g00124 . . . . Cma05g00522 Car05g00473 . . . . . . . . . . . . . . . . . Lsi08g00999 Csa02g02183 Chy03g01334 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011405 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 3 1 31