Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0470 ATGGCGGTTACAATTACCAGAAAATTTCTCCCCGTCGCTACCGGAACTAACCAACAAACCCCCAATTGTTCTAGCTGCCCTTTTGACTGCCCCTTCGACTGCTTCGATTTTCCAGATTTCAACTTCCCGCCGCCGTCGCCGCCGCCTCGCGACCACCAAAAACAACTTCAACCAGTAACCATCGTTCTAATCGCTCTGTTCGTCGGTTTTTTCTTCGCTTTCAGTTTCTACATCCTCCTCGTGAAATGCCGGGCTTGGGGCAGTGGGTCCCGGAACGTGGCGGCGGATTCACAATCAGACGGCGGAGAGGGAGAGTTTGTGAACGAGAATCAAATAGAACATCCAATTTGGTTCATCACCACCGTCGGGCTGCAGCAATCGGTAATCAATTCGATTACGGTTTGCAAGTACAATAAAAGCGATGGTTTGATTGAAGGAACAGAGTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGATGAAATGCTTAGGCTTTTGCCGAAATGCAGCCATGCGTTTCATATTGGATGTGTGGATACTTGGCTGAGGACTCATACAACTTGCCCGCTCTGTCGAGCTCATATTCTTACTGATTTTGCGAGCTCTAATTCTCTGAGGCCAACGAATTTAGGTGCTGTGAATCAAAACGAAGCTAATTTGGGCGTAATTGAAGAGACCCAGATCGAGAATTTGGAGATTAATGGCGAAGTTTTGGGGGAAAATCAGAGTGTTGATGATGAAAACAGAGGAGATGTTGATGAACAGAGAGAAATTGGGGTTCAGATTGGGGAGATGGTTCCAAAAGAGGTAATATTTGAACCTGACGAAGGAACTGAGACTATCAGGAATAGAGCATAG 855 46.2 MAVTITRKFLPVATGTNQQTPNCSSCPFDCPFDCFDFPDFNFPPPSPPPRDHQKQLQPVTIVLIALFVGFFFAFSFYILLVKCRAWGSGSRNVAADSQSDGGEGEFVNENQIEHPIWFITTVGLQQSVINSITVCKYNKSDGLIEGTECSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFASSNSLRPTNLGAVNQNEANLGVIEETQIENLEINGEVLGENQSVDDENRGDVDEQREIGVQIGEMVPKEVIFEPDEGTETIRNRA 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5431431 5432615 - Hsped.10g04700.1 Hepe10g0470 581017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0470 284 SMART FANCL_C_2 145 199 - -
Hepe10g0470 284 FunFam RING-H2 finger protein ATL54 124 197 - -
Hepe10g0470 284 Pfam Ring finger domain 148 191 IPR001841 -
Hepe10g0470 284 SMART ring_2 149 190 IPR001841 -
Hepe10g0470 284 CDD RING-H2_EL5-like 148 191 - -
Hepe10g0470 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 198 IPR013083 -
Hepe10g0470 284 SUPERFAMILY RING/U-box 130 197 - -
Hepe10g0470 284 PANTHER RING-H2 FINGER PROTEIN ATL16 43 226 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Hepe10g0470 284 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0470 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0730 Hepe-Chr2:8018562 Hepe10g0470 Hepe-Chr10:5431431 1.01e-40 dispersed
Hepe03g1807 Hepe-Chr3:74997233 Hepe10g0470 Hepe-Chr10:5431431 3.82e-07 dispersed
Hepe04g1416 Hepe-Chr4:69809742 Hepe10g0470 Hepe-Chr10:5431431 5.18e-38 dispersed
Hepe05g1796 Hepe-Chr5:68222236 Hepe10g0470 Hepe-Chr10:5431431 3.93e-35 dispersed
Hepe06g0897 Hepe-Chr6:56252158 Hepe10g0470 Hepe-Chr10:5431431 5.42e-16 dispersed
Hepe06g1781 Hepe-Chr6:68893385 Hepe10g0470 Hepe-Chr10:5431431 3.41e-40 dispersed
Hepe09g0788 Hepe-Chr9:7685137 Hepe10g0470 Hepe-Chr10:5431431 3.12e-24 dispersed
Hepe10g0470 Hepe-Chr10:5431431 Hepe10g1344 Hepe-Chr10:49575316 6.19e-20 dispersed
Hepe10g0467 Hepe-Chr10:5378464 Hepe10g0470 Hepe-Chr10:5431431 8.10e-19 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29