Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0488 ATGGCTTCTTCCACTTCTTCAGCAATGCTTCAAATCCTCTTCGTAATCGCTTTCTTCCAAATCACTTTCGCATCAAGAATGCAAAACGAAGTCGTTCAAGACCAAACCCAGCTGCTCAAATACCACAACGGCGCTCTTCTTTCCGGCAAAATCTCTGTCAATCTAATTTGGTATGGCAAATTCAAACCTTCTCAGAAAGCAATCGTTTCCGATTTTGTCAACTCCCTTTCTTATTCCCGACCCCAACAAATCGGGCCGTCGGTTTCCACTTGGTGGAAACTAACAGAGAAATACTACCAATTATCCTCCAAGAAATCCAATCCTCTGTTTCTCAATCTCGGCCGGCAAATTCTCGACGAGAATTACTCCCTCGGGAAATCCCTCACCAACAAACAAATCGTTCAATTAGCTTCAAAGGGTGACCAAAAAAACGCAATCAACGTCGTTTTGACTTCCTCCGATGTCGCCGTCGATGGGTTCTGTATGAGCCGCTGCGGGACTCACGGCTCTGCCTCCGCCGTCCCCGCTGCCTCCACCTCGAAGAATTACAAATTTGCCTACATTTGGGTTGGAAATTCCGAGACCCAATGTCCAGGACAGTGCGCTTGGCCGTTCCATCAGCCGATTTATGGACCACAATCGCCACCCCTCATTGCGCCGAACGGCGATGTGGGTATGGACGGAGTGATTATAAATCTTGCTAGTCTGTTGGCCGGAACCGCCACCAACCCGTTTGGTAACGGCTACTTTCAGGGTCCGGCGGAGGCGCCGTTGGAGGCGGCTTCTGCCTGTACCGGCGTTTATGGGAAAGGGGCTTATCCTGGTTACGCCGGGGATTTGCTGACTGACTCTGTTACCGGCGGGAGCTACAATGCTAACGGCGGTAACGGGAGGAAATATTTGGTTCCGGCTTTGTTTGATCTTTCCACGGCGGCTTGTTCGACTTTGGTCTGA 954 50.31 MASSTSSAMLQILFVIAFFQITFASRMQNEVVQDQTQLLKYHNGALLSGKISVNLIWYGKFKPSQKAIVSDFVNSLSYSRPQQIGPSVSTWWKLTEKYYQLSSKKSNPLFLNLGRQILDENYSLGKSLTNKQIVQLASKGDQKNAINVVLTSSDVAVDGFCMSRCGTHGSASAVPAASTSKNYKFAYIWVGNSETQCPGQCAWPFHQPIYGPQSPPLIAPNGDVGMDGVIINLASLLAGTATNPFGNGYFQGPAEAPLEAASACTGVYGKGAYPGYAGDLLTDSVTGGSYNANGGNGRKYLVPALFDLSTAACSTLV 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5666903 5668210 - Hsped.10g04880.1 Hepe10g0488 581035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0488 317 Pfam Phosphate-induced protein 1 conserved region 39 316 IPR006766 -
Hepe10g0488 317 PANTHER PROTEIN EXORDIUM-LIKE 5 9 316 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0488 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2134 Hepe-Chr1:86005897 Hepe10g0488 Hepe-Chr10:5666903 3.15e-144 dispersed
Hepe01g2135 Hepe-Chr1:86010236 Hepe10g0488 Hepe-Chr10:5666903 2.45e-134 dispersed
Hepe10g0488 Hepe-Chr10:5666903 Hepe10g0490 Hepe-Chr10:5688423 1.14e-109 proximal
Hepe07g0343 Hepe-Chr7:3496586 Hepe10g0488 Hepe-Chr10:5666903 9.24e-125 transposed
Hepe01g2133 Hepe-Chr1:86002079 Hepe10g0488 Hepe-Chr10:5666903 2.81e-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g430 . . . . . . . Bma01g02609 . Cmo12g00126 Cma01g01612 . . . Sed07g1190 . . Bhi04g00771 Tan02g2402 Cmetu07g0101 . Hepe10g0488 . Lcy13g1553 Cla08g01117 Cam08g1573 Cec08g1143 Cco08g1270 Clacu08g1274 . Cre08g1055 Cone4ag1329 Cone7ag1270 Cone17ag1212 . Lsi04g02242 Csa03g04453 . Cme03g01858 . . . . . Bpe14g00458 . . . . . Cma12g00163 . . . . . Bhi09g02445 Tan01g3797 Cmetu04g2098 . Hepe01g2134 Mch11g0672 . . . . . . . . Lsi08g00974 Csa02g02158 Chy03g01361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88