Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0515 ATGGCTGCTTTGATGGATTTCTATGGTTGCAGAGATTTACAGTCGGATCCATTTGGTGGTGAATTAATGGAAGCTCTTGAACCTTTTATGAAAGTTGCTTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCCTTCTTCTTCTTACCCTTCTGATTGCTCTGCTCCGATGACCCAATTATTTTCCGGCGGTTTAGAGCAATCGGACTCGATCGGACTTAATTACTTGAGTCCTTTTCAGATCCAACAGATCCAATCTCAATTCGCTCTCCAAACCCTAATTCAGCCAGTTTGGGGACAGATCAACCACCACCACCACCAAGATCTATCTAAAAACCTAACCAACGGTGTGAATTTGCTTGGTCCGAAGGCGATTCCGATGAAACATGTCGGATCTCCATTGAAATCGACGAAGCTTTACCGCGGCGTGAGGCAAAGACATTGGGGGAAATGGGTGGCGGAGATTCGTCTACCGAGGAACCGTACTCGGCTATGGCTTGGCACCTTCGATACCGCTGAAGAAGCTGCTTTAGCCTACGATCGAGCCGCTTACAAGCTCCGAGGCGATTTCGCTAGGCTTAATTTCCCTCACCTGAACCATGGCTCCTCCGTCGGCGGCGATTTCGGCGACTACAAGCCGCTCCACTCCGCCGTCGACGCGAAGCTCGATGCCATCTGCCAAACCTTGGCCGAGTCGCAGAAACAGGGGAAGTCGAAATCGGACCGGTCGAGGAAGTCGAAATCGGTGTCGCAGGTGCAGACGGTGATTGATTCCGACGACGATCTGAAGGCGACGGAAGTTGGATCGAGTGGATCGGAGATCTGTTGTAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGACGAGTCGGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCCGATCCGACGGATTCGCCATGGGAACAGCCGTCGGAAAGCTGTATGTTGGAGAAATATCCGTCTGAAATCGATTGGGCTTCGATTTTCACTTCTTGA 1011 51.14 MAALMDFYGCRDLQSDPFGGELMEALEPFMKVASPSSSSSSSSFLPSSSYPSDCSAPMTQLFSGGLEQSDSIGLNYLSPFQIQQIQSQFALQTLIQPVWGQINHHHHQDLSKNLTNGVNLLGPKAIPMKHVGSPLKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAYKLRGDFARLNFPHLNHGSSVGGDFGDYKPLHSAVDAKLDAICQTLAESQKQGKSKSDRSRKSKSVSQVQTVIDSDDDLKATEVGSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEQPSESCMLEKYPSEIDWASIFTS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5945996 5948281 - Hsped.10g05150.1 Hepe10g0515 581062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0515 336 Gene3D AP2/ERF domain 140 198 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0515 336 MobiDBLite consensus disorder prediction 275 315 - -
Hepe10g0515 336 Pfam AP2 domain 140 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0515 336 CDD AP2 139 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0515 336 MobiDBLite consensus disorder prediction 274 321 - -
Hepe10g0515 336 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677(InterPro)
Hepe10g0515 336 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0515 336 MobiDBLite consensus disorder prediction 232 255 - -
Hepe10g0515 336 FunFam Ethylene-responsive transcription factor 2 139 198 - -
Hepe10g0515 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 17 333 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe10g0515 336 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0515 336 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g0515 336 SMART rav1_2 140 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0148 Hepe-Chr2:1630056 Hepe10g0515 Hepe-Chr10:5945996 1.05e-31 dispersed
Hepe06g1481 Hepe-Chr6:65408031 Hepe10g0515 Hepe-Chr10:5945996 2.10e-28 dispersed
Hepe07g0805 Hepe-Chr7:9853770 Hepe10g0515 Hepe-Chr10:5945996 3.13e-36 dispersed
Hepe08g0527 Hepe-Chr8:4643040 Hepe10g0515 Hepe-Chr10:5945996 8.31e-32 dispersed
Hepe10g0226 Hepe-Chr10:2400040 Hepe10g0515 Hepe-Chr10:5945996 1.75e-20 dispersed
Hepe10g0227 Hepe-Chr10:2410480 Hepe10g0515 Hepe-Chr10:5945996 2.08e-20 dispersed
Hepe10g0515 Hepe-Chr10:5945996 Hepe10g0599 Hepe-Chr10:7330413 5.64e-22 dispersed
Hepe01g2248 Hepe-Chr1:87147045 Hepe10g0515 Hepe-Chr10:5945996 6.67e-96 transposed
Hepe10g0515 Hepe-Chr10:5945996 Hepe04g1449 Hepe-Chr4:70152923 2.99e-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56462 PF00847 AP2 2.50E-15 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0515 K09286 - csv:101222833 469.929